PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G52060.1

Common Name

LOC102718971

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1167aa MW: 128104 Da PI: 9.5094

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G52060.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.6	3.7e-07	76	132	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++lF+ + ++ ++e +e+++++g+t +qV+ +F +R++ +k OB01G52060.1 76 KRPRDLLNPKAVKSMQSLFAVKDTIGKKETREISASCGVTVTQVREFFASQRTQVRK 132 799*************************************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.086	73	133	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-6	75	136	IPR009057	Homeodomain-like
SMART	SM00389	0.0029	75	137	IPR001356	Homeobox domain
Pfam	PF00046	1.0E-4	76	132	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.5E-5	76	138	IPR009057	Homeodomain-like
CDD	cd00086	5.00E-4	76	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1167 aa Download sequence Send to blast
MELVPLKPAA GALVESSGGG AAFGDSIPAT VAAQQEMLHA QVDQLRRLVV AQCRLTGVNP 60 LAQEMAAGAL CIKIGKRPRD LLNPKAVKSM QSLFAVKDTI GKKETREISA SCGVTVTQVR 120 EFFASQRTQV RKFVRLSREK ALRLQSSKAP DNLCYISSEQ APVDIEAHAQ VIEPLRTLEP 180 LDVQQSSLQH VMVPQISSQL PVVPPSYAIP VAPTDIMQVT VQLTDAKTNS DSIQKETKQD 240 GVSTGVESED KKFLESIFAL MRKENTFSGQ VKLMESILQI NNVTVLSWFL TMGGLAIVST 300 WLGEAVNEEQ TTVILVIFKL LLHLPLHKAL PAHMSTVLQT INRLRFYRTQ DISSKARNLL 360 SRLSKVLVRS QALKKSQKNL ICKQRINEIL RDESWKSEVG ITEGILALTE DASESRMPEA 420 KKTPLLLTAS ADESNKKSSL QTKSKERRKV LLVEHPNRKA VGKNVNPARS TSTNSSRPLS 480 ADDIQKAKMR AMFMQEKYGK VDTSKVTDKP HTMEIQKSSG LVDSNAPLVP RSPLTSIIKQ 540 SVDPSPSTSK QSILSPPDKP EVPVSSKLNI ATQENIIEKF DSKRVLWQIP PDVWIDPAWS 600 LGTGENSKEF EVQTQRNRRE KETFYTSLKD IPLNPKDPWD VEMDFDDSLT PEIPIDQPPD 660 ADAMETNSVG TAPPNIEVPV ADKQVGSTSL ISPVVAAGAN GAASEPDLEL LAVLLKNPQL 720 VFALTSNQGG TLPSEQTVAL LDMLKQTGLG LSELVNGLAN NSGVQKEPES GPETIPTSLP 780 SPTPPKDLAA RDGWRSEFPS QMRTSNLQRT HLPNRANVPP IASTVQQSFS NVVSSLPSQP 840 YASASALPAQ IQTNILALAQ SSISVNPSTQ HVAPMNNLLS RATVHQHTQS YALASDPIAV 900 AVHQQPAVNK LAHEVQNISH PSTTHSSVPE PHASHTSHTW QPSAATVATT GRNATPDRWS 960 TRTTSAFNVA PSNPVTYPKQ NAYSNHSTKG TTYNAYGSTP VTSHSLLPGQ GRDRNGYTHT 1020 TEYQTTARDA LRRNSRSPEL GAGAVYGGSQ SYVPEPSRQW SYGQQSYNPE PSRQWSSGQQ 1080 SYNSAEPSRQ WSSQQQQQQQ GYNNPAEPSR QWSSSQQQGY NPEPSRLWNS GRQSQNPEAP 1140 RQWNQHGKQE RYNPTDGRNS YDQRWRR

Sequence ? help Back to Top

Protein Sequence Length: 1167 aa Download sequence Send to blast

MELVPLKPAA GALVESSGGG AAFGDSIPAT VAAQQEMLHA QVDQLRRLVV AQCRLTGVNP  60
LAQEMAAGAL CIKIGKRPRD LLNPKAVKSM QSLFAVKDTI GKKETREISA SCGVTVTQVR  120
EFFASQRTQV RKFVRLSREK ALRLQSSKAP DNLCYISSEQ APVDIEAHAQ VIEPLRTLEP  180
LDVQQSSLQH VMVPQISSQL PVVPPSYAIP VAPTDIMQVT VQLTDAKTNS DSIQKETKQD  240
GVSTGVESED KKFLESIFAL MRKENTFSGQ VKLMESILQI NNVTVLSWFL TMGGLAIVST  300
WLGEAVNEEQ TTVILVIFKL LLHLPLHKAL PAHMSTVLQT INRLRFYRTQ DISSKARNLL  360
SRLSKVLVRS QALKKSQKNL ICKQRINEIL RDESWKSEVG ITEGILALTE DASESRMPEA  420
KKTPLLLTAS ADESNKKSSL QTKSKERRKV LLVEHPNRKA VGKNVNPARS TSTNSSRPLS  480
ADDIQKAKMR AMFMQEKYGK VDTSKVTDKP HTMEIQKSSG LVDSNAPLVP RSPLTSIIKQ  540
SVDPSPSTSK QSILSPPDKP EVPVSSKLNI ATQENIIEKF DSKRVLWQIP PDVWIDPAWS  600
LGTGENSKEF EVQTQRNRRE KETFYTSLKD IPLNPKDPWD VEMDFDDSLT PEIPIDQPPD  660
ADAMETNSVG TAPPNIEVPV ADKQVGSTSL ISPVVAAGAN GAASEPDLEL LAVLLKNPQL  720
VFALTSNQGG TLPSEQTVAL LDMLKQTGLG LSELVNGLAN NSGVQKEPES GPETIPTSLP  780
SPTPPKDLAA RDGWRSEFPS QMRTSNLQRT HLPNRANVPP IASTVQQSFS NVVSSLPSQP  840
YASASALPAQ IQTNILALAQ SSISVNPSTQ HVAPMNNLLS RATVHQHTQS YALASDPIAV  900
AVHQQPAVNK LAHEVQNISH PSTTHSSVPE PHASHTSHTW QPSAATVATT GRNATPDRWS  960
TRTTSAFNVA PSNPVTYPKQ NAYSNHSTKG TTYNAYGSTP VTSHSLLPGQ GRDRNGYTHT  1020
TEYQTTARDA LRRNSRSPEL GAGAVYGGSQ SYVPEPSRQW SYGQQSYNPE PSRQWSSGQQ  1080
SYNSAEPSRQ WSSQQQQQQQ GYNNPAEPSR QWSSSQQQGY NPEPSRLWNS GRQSQNPEAP  1140
RQWNQHGKQE RYNPTDGRNS YDQRWRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G52060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066698	0.0	AK066698.1 Oryza sativa Japonica Group cDNA clone:J013073H18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006645287.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
TrEMBL	J3L7K0	0.0	J3L7K0_ORYBR; Uncharacterized protein
STRING	OB01G52060.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-143	HB-other family protein

Link Out ? help Back to Top
Entrez Gene	102718971