PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G51580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 762aa MW: 85673.7 Da PI: 7.0197 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72 | 7.4e-23 | 83 | 184 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++ +++a+e+ +++++ ++l+ +d++g W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++ OB01G51580.1 83 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENG 175 99*****************************7555544..58************************************************..44999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 el+v+v+r+ OB01G51580.1 176 ELRVGVRRA 184 9*****996 PP | |||||||
2 | Auxin_resp | 111.3 | 9.6e-37 | 209 | 290 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tks+F+v+Y+Pr+s+seF++++++++++ k+++svGmRf+m+fe+e+++e+r++Gt++g ++ld+ Wp+S WrsLk OB01G51580.1 209 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESAKNNYSVGMRFRMRFEGEEAPEQRFTGTIIGSENLDT-MWPDSSWRSLK 290 89******************************************************************999.9********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.79E-40 | 75 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-40 | 76 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.44E-20 | 81 | 183 | No hit | No description |
Pfam | PF02362 | 1.1E-20 | 83 | 184 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.787 | 83 | 185 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-22 | 83 | 185 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-33 | 209 | 290 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.5E-14 | 626 | 731 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.55E-13 | 640 | 723 | No hit | No description |
PROSITE profile | PS51745 | 26.238 | 646 | 739 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 762 aa Download sequence Send to blast |
MGRGKWGEKK HETGCSFGLP VPWTSTSLAT KYLCTSTVLA EQDTDEVYAQ IMLMPEPEQN 60 EMAVEKTTPT SGPVQARPPV RSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMTQSPPT 120 QELVAKDLHG MDWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG 180 VRRAMRQLSN VPSSVISSQS MHLGVLATAW HAINTKSMFT VYYKPRTSPS EFIIPYDQYM 240 ESAKNNYSVG MRFRMRFEGE EAPEQRFTGT IIGSENLDTM WPDSSWRSLK VRWDEPSTIP 300 RPDRVSPWKI EPASSPPVNP LPLSRVKRSR PNAPPASPES PILTKEAATK VDIDSAQAQR 360 SQNNMVLQGQ EQMTLRNNLT DSNDPDAAAP KPMMWSPSPN GAKPHPLSFQ QRPPMDSWMQ 420 LGRRENDFKD PRSGSQSFGD SSGFFVQNFD EAPNRLSSFK NQFQDQGSAR HFSDPYFFVS 480 PQPSLTVESS TQMHTDSKEL HFWNGQSTVY NSRDQPQNFR FEQNSSSWLN QSFSRPEQPR 540 VIRPHASIAP VELEKTGEGS GFKIFGFKVD TTNAPNNHLS SPMAATHEPM IQTPSSLNQL 600 QSAQTDCIPE VSVSTAGTAT ENEKSAQQAQ QSSKDVQSKS QGASTRSCTK VHKQGVALGR 660 SVDLSKFSNY DELKAELDKM FEFEGELVSS NKNWQIVYTD NEGDMMLVGD DPWEEFCSIV 720 RKIYIYTKEE VQKMNSKSNT PRKEDSTENE KSHLPVLHKS DN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-135 | 18 | 315 | 59 | 357 | Auxin response factor 1 |
4ldw_A | 1e-135 | 18 | 315 | 59 | 357 | Auxin response factor 1 |
4ldw_B | 1e-135 | 18 | 315 | 59 | 357 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G51580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071293 | 0.0 | AB071293.1 Oryza sativa OsARF2 mRNA for auxin response factor 2, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015699221.1 | 0.0 | PREDICTED: auxin response factor 4 | ||||
Swissprot | Q5JK20 | 0.0 | ARFD_ORYSJ; Auxin response factor 4 | ||||
TrEMBL | J3L7F2 | 0.0 | J3L7F2_ORYBR; Auxin response factor | ||||
STRING | OB01G51580.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
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