PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G49980.1
Common NameLOC102702627
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 341aa    MW: 36765.5 Da    PI: 4.866
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G49980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05315338123
                   EEETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                   y C+ C+k+F++ + L+ H +  H
  OB01G49980.1 315 YACKSCNKTFNSTMGLEAHSKAkH 338
                   89*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.635315341IPR007087Zinc finger, C2H2
PROSITE patternPS000280317338IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MPPMEGSMGF WGGVVKPGET VKCDPPGEFY YHISQIALEP GELNENVQVF VQVDGKRTLL  60
GALSAEHCPQ FAIDLVFEKE FELLHTSKTY SIFFSGYQAA PARRSDSPIE EGDESDEEVP  120
LAIPLYPSSN DDRIKEHSPS KLTALKAAAA ASPIPEALVE EREKHGKSKA DDDDSEEENG  180
DGSGEGESGD DEDIIDGLNS SDDDDGESSD EEETPSKNLE GKTRPVETPL KTPPQKKAKL  240
ATPIIDSKAG TGTSKKGGYV HVATPHPAKQ AKKTHANIDM PTHSSGYVHF ATPYPVKQAK  300
KTPANHDMSK HSSGYACKSC NKTFNSTMGL EAHSKAKHTA T
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G49980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694821.10.0PREDICTED: histone deacetylase HDT2-like
TrEMBLJ3L6Z20.0J3L6Z2_ORYBR; Uncharacterized protein
STRINGOB01G49980.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.17e-18histone deacetylase 2C