PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G49820.1
Common NameLOC102716361
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1279aa    MW: 141124 Da    PI: 8.6042
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G49820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0009811841206323
                    ET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                    Cp   Cgk F ++ +L +H ++H
  OB01G49820.1 1184 CPvkGCGKKFFSHKYLLQHRKVH 1206
                    9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.1E-162364IPR003349JmjN domain
PROSITE profilePS5118314.7282465IPR003349JmjN domain
PfamPF023756.8E-152558IPR003349JmjN domain
SMARTSM005581.7E-49192361IPR003347JmjC domain
PROSITE profilePS5118436.321195361IPR003347JmjC domain
SuperFamilySSF511974.67E-25207357No hitNo description
PfamPF023733.0E-37225344IPR003347JmjC domain
SMARTSM003551911591181IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.61211821211IPR007087Zinc finger, C2H2
SMARTSM003550.6211821206IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.7E-611841210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011841206IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-911981238No hitNo description
Gene3DG3DSA:3.30.160.601.5E-812111236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.32312121241IPR007087Zinc finger, C2H2
SMARTSM003550.002912121236IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012141236IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-712301264No hitNo description
Gene3DG3DSA:3.30.160.608.4E-912371265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.1812421273IPR007087Zinc finger, C2H2
SMARTSM003551.712421268IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012441268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1279 aa     Download sequence    Send to blast
MRSSPPPAPA AELVPPWLKS LPLAPVFRPT AAEFADPVAY IHKIEAAAAP YGICKVVPPL  60
PPPPKKAALS SLSRSFAALH PDDPSPSFPT RHQQLGLCPR RPRPALKPVW RSSHRYTLPQ  120
FESKAAAARK SLLARLNVPA SKQLTPLDHE VLFWRASADR PIVVEYGSDM PGSGFSPCAA  180
QPPAAAARAG EHVGETAWNM CGVARSPGSL LQFMREDVPG VTTPMLYVGM MFSWFAWHVE  240
DHELHSLNYM HLGAGKTWYG VPRDAALAFE EVVREHGYSG EVNPLETFAT LGRKTTVMSP  300
EVLVDMGIPC CRLVQNAGEF VVTFPGSYHC GFSHGFNCGE ASNIATPEWL RIAKEAAIRR  360
ASVNCPPMVS HYQLLYELAL SMRFREPSSG EMGTRSSRLK DKKKCEGEQL VKRMFIQNVI  420
EDNKLLSHLL NDGSSCIILP SNAYGGPVFS ALHSKYQSKL NSGISHDLCN MEEAPEASGC  480
LSLNRNGDTR HCISSDMRNM EGDKGDGLLD QGLLSCVTCG ILSFSCVAVL KPRDCTARYL  540
MSADSNSINN QLCISGGSTL ADAIINERNG VISRPGSERC CNKKMSDDAE IDRNSALDLL  600
AFAYGGQSDS EEDPLKKILQ VAHNSDQLLR GIIESQPKSS SNVGCFGTKL SSSSTESKEI  660
PSSQNARCIG SSVISNGPKG VRTRNKYQLK MVLSEGFQAK DMFSVKEKKV QPEPSSSKGS  720
VKETVDGGTK NDAGYTISVS EHRGSTEDMY SAKDKKVQSE SSNLDGTAKE TVDVSGTEND  780
ARCNSTTISV SEHRGSTPMI NSLATSIVKP DKDSSRMHVF CLEHAIEVEK QLHAIGGSHI  840
ILLCHPEYPK IEVEARLLAE EMGVRYDWKG IHFKEANMED RKKIQEVLQD EEAIPTSSDW  900
AVKLGINLYY SANLAKSPLY NKQMPYNRVI YRAFGCNSQN DLPVKLNTCE RKQSHQKKIA  960
VAGRWCGKVW TSKQVHPYLA HRVESQEGEE ADRICYYRVD EKHKAEPIGN SSRTEASKRK  1020
SSSLTDGTES SNRREEIPGE ETNTKRPKHS EEDNLRALES AAEVVAPSPA GTVLRISSRI  1080
ANRAKKLKSK MAEDDGPSNH PKSNIEEKSS HASGQKSNIQ EENANSASHL RATPPKQKTE  1140
VEAKKQTKIP KAPKQAVEYP CDVDGCSMSF HTKRDLSLHK SDICPVKGCG KKFFSHKYLL  1200
QHRKVHTDDR PLTCPWEGCN MAFKWPWART EHLRVHTGDR PYVCHEPGCA QTFRFVSDFS  1260
RHKRKTGHSV KKKKKKAKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-73174508413Transcription factor jumonji (Jmj) family protein
6ip4_A1e-73174508413Arabidopsis JMJ13
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G49820.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689520.0AK068952.1 Oryza sativa Japonica Group cDNA clone:J023001N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645195.10.0PREDICTED: lysine-specific demethylase JMJ705-like
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLJ3L6X60.0J3L6X6_ORYBR; Uncharacterized protein
STRINGOB01G49820.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-171relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]