PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G49710.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 627aa    MW: 70129.3 Da    PI: 6.2604
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G49710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.63.1e-1583170197
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   ffk++    +++++ + +p +fa++++  +     + led+ g +W+v+l  + + g   ++ GWk+Fv ++++ +g+f+vF+ + rs f  +v++f
  OB01G49710.1  83 FFKIM--VGYFSEN-MDIPLPFARTISDLTG--SNVYLEDTYGLRWRVRL--CLQNGVLSFGHGWKNFVLDHDISVGEFLVFRQIARSVF--TVQIF 170
                   66666..5566666.9**********65533..37***************..77777789***********************9998999..88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-2277175IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-2078175IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.01480173IPR003340B3 DNA binding domain
CDDcd100172.20E-1881170No hitNo description
PfamPF023621.6E-1283170IPR003340B3 DNA binding domain
SMARTSM010195.4E-1583173IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.0E-12528623IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-14529621IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.925530625IPR003340B3 DNA binding domain
CDDcd100176.69E-10531623No hitNo description
SMARTSM010190.096533625IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MVELIRVIKV EQEEGIADSH GEEKDEKGDG HEEKAEKVRR RRKRVYDPQR KKACVDCTKR  60
CIRVHGRASS DEKSRPTPTL PSFFKIMVGY FSENMDIPLP FARTISDLTG SNVYLEDTYG  120
LRWRVRLCLQ NGVLSFGHGW KNFVLDHDIS VGEFLVFRQI ARSVFTVQIF ALSACERIHL  180
CERNNRQSRK RKPRRKTGHS ANQMVKASNK CVDKRRKKQR TEQRCDLGKS QPDMPVHVSI  240
DSGSELKCSE SSVKELGVAA DESHEAVKVA ARETDSCAIE CNATVMSDDQ ESARAHQDMP  300
MQLYCELGLQ DGNGETRNCE NSSILENAEL RTPLAMMDLN EVSIDDIFLS ADIYEFDSDF  360
CSPEAFSVEL NTQVLANNGR GSGDCFGMPE TSTCLENKQM SDVPRTRADA GSVALHGIDI  420
NALPRNELSE TAGQDSTCPD IDAAPDDCKK DKDIMPSEGN QVAQKADSSA RKDIIQDGPR  480
QIAAEIMPSI PKTCGITDVR ENSLQLGNNS KGRERGSTKS CVVLGVAANN KKFCITVPPT  540
DQTWLELPRR LPVLPRTKKQ ARKILILKDP CMRLWPVLYQ CTPKFNGFIA GWADISRENN  600
LHEGDTCEFE LCSNSELSFQ VLVPDLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13951RRRKRVYDPQRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G49710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635300.0AK063530.1 Oryza sativa Japonica Group cDNA clone:001-117-B02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646580.10.0PREDICTED: B3 domain-containing protein Os01g0905400-like
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLJ3L6W50.0J3L6W5_ORYBR; Uncharacterized protein
STRINGOB01G49710.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-10B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]