PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G49420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 147aa MW: 16448.6 Da PI: 8.5005 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.4e-13 | 81 | 126 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + +++L Av+YIk+Lq OB01G49420.1 81 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDIAVNYIKELQ 126 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.253 | 75 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-16 | 78 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.72E-12 | 79 | 130 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.4E-16 | 80 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-13 | 81 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-10 | 81 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MSSWDDTNSI MFSPPSSSKK ARVGGDHGDD MVSSFSNIDS QFGLSKSSLE MSSMDDFMQL 60 QPDSVACRAR AKRGCATHPR SIAERERRTR ISKRLKKLQD LVPNMDKQTN TSDMLDIAVN 120 YIKELQGQVE KLKHDQANCT CLGKQNC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G49420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068254 | 1e-141 | AK068254.1 Oryza sativa Japonica Group cDNA clone:J013149F02, full insert sequence. | |||
GenBank | AK105713 | 1e-141 | AK105713.1 Oryza sativa Japonica Group cDNA clone:001-201-E12, full insert sequence. | |||
GenBank | HQ858859 | 1e-141 | HQ858859.1 Oryza sativa Japonica Group isolate UT1668 bHLH transcription factor mRNA, partial cds. | |||
GenBank | HQ858868 | 1e-141 | HQ858868.1 Oryza sativa Japonica Group isolate UT1677 HLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690675.1 | 1e-105 | PREDICTED: transcription factor bHLH128-like, partial | ||||
Swissprot | Q8H102 | 1e-45 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | J3L6T6 | 1e-105 | J3L6T6_ORYBR; Uncharacterized protein | ||||
STRING | OB01G49420.1 | 1e-106 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7071 | 37 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 6e-48 | bHLH family protein |
Publications ? help Back to Top | |||
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