PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G48710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 133aa MW: 13839.8 Da PI: 8.8078 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 2 | 24 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+ F++ L H+r+H OB01G48710.1 2 HQCKQCPAAFPTGVALGGHMRKH 24 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 8.1E-9 | 2 | 24 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.6 | 2 | 29 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 4 | 24 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MHQCKQCPAA FPTGVALGGH MRKHLNRPLV VNRKKQKPPQ DGSDLRLSLA PPGQGAAPAP 60 APEPVPAIAA AASPPAQAQP EQPKEEVAEH GAEPASETMP TPAPAPAPEP TPTNRRGRTV 120 RIFGVDVEMP PLG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G48710.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696942.1 | 2e-14 | PREDICTED: zinc finger protein 219-like | ||||
TrEMBL | J3L6L5 | 2e-87 | J3L6L5_ORYBR; Uncharacterized protein | ||||
STRING | OB01G48710.1 | 4e-88 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13928 | 12 | 24 |