PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G48600.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 572aa    MW: 63838.9 Da    PI: 8.0826
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G48600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.51.3e-49531782128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                   +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++++
  OB01G48600.1  53 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRAENNR 148
                   79***************************.89***************888889******************************************** PP

           NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                    +glkktLvfy+g+apkg++++W+m+eyrl
  OB01G48600.1 149 PIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 178
                   ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-5552198IPR003441NAC domain
PROSITE profilePS5100555.24652199IPR003441NAC domain
PfamPF023652.6E-2454178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MHMRRGRAAG GEAEAAAAVM SRYENSGHVV AAGGGGNKAA AGEEDGHEDD LVMPGFRFHP  60
TEEELIEFYL RRKVEGKRFN VELITFLDLY RYDPWELPAM AAIGEKEWFF YVPRDRKYRN  120
GDRPNRVTAS GYWKATGADR MIRAENNRPI GLKKTLVFYS GKAPKGVRSS WIMNEYRLPP  180
ADTDRYHKTE ISLCRVYKRT GIDDGHGHIC TARSAQSRGR GATTQDNKQG SSSTSTPTPP  240
PTPSKLHLLN GECTSPPAIV TDXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXGAGGGSL QQQSSMASAA QTAAVDQQLQ QDVAAALYHQ YSKNTNSTFA  480
STYSLLNLVS AASMGSSAAA IDELSSLVGH DQPSYLNPAG SYSQFIPLPT TPSSQPTALG  540
TMSLAAISDK IWDWNNPTPE AGSRDYSAAG FK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-525419919165NO APICAL MERISTEM PROTEIN
1ut4_B3e-525419919165NO APICAL MERISTEM PROTEIN
1ut7_A3e-525419919165NO APICAL MERISTEM PROTEIN
1ut7_B3e-525419919165NO APICAL MERISTEM PROTEIN
4dul_A3e-525419919165NAC domain-containing protein 19
4dul_B3e-525419919165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G48600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029020.0AK102902.1 Oryza sativa Japonica Group cDNA clone:J033113D13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695832.11e-157PREDICTED: NAC transcription factor ONAC010
TrEMBLJ3L6K41e-153J3L6K4_ORYBR; Uncharacterized protein
STRINGOB01G48600.11e-154(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.14e-99NAC domain containing protein 35