PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G47470.1
Common NameLOC102709040
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 522aa    MW: 57169.9 Da    PI: 5.6115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G47470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.7e-06282303223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    C +Cgk F+r  nL+ H+r H
  OB01G47470.1 282 FCMICGKGFKRDANLRMHMRGH 303
                   59******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.27E-5279306No hitNo description
SMARTSM003550.0057281303IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.697281308IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-5282307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280283303IPR007087Zinc finger, C2H2
SMARTSM0035568330363IPR015880Zinc finger, C2H2-like
SMARTSM0035522368390IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MDSTLRSSET SLKTLPSMAN NAARNTDPDQ QGVRFNSMDQ PCFARPGQSF PAFPPLFGVQ  60
SSSSLYLPDD IEAKTGNQFE SNPSLNNPTM DWDPQAMLSN LSFLEQKIKQ VKDIVQSMSN  120
RESQVAGGSS EVQAKQQLVT ADLTCIIIQL ISTAGSLLPS MKNPLSSNPA LRHLSNTLGA  180
PMILGTSCNQ QPRSNDEAAI PDITKNPDYE ELMNSLNTTQ GDGDETMKCQ NPCGGEGSEP  240
IPMDDHDVKE SDDGGEGENL PPGSYVVLQL EKEEILAPHT HFCMICGKGF KRDANLRMHM  300
RGHGDEYKTP AALAKPSKDS SSEPAPVTRY SCPYVGCKRN KEHKKFQPLK TILCVKNHYK  360
RSHCDKSYTC SRCNTKKFSV IADLKTHEKH CGRDKWLCSC GTTFSRKDKL FGHVALFQGH  420
TPALPMDDVK VTGASEQPQG SEAMNSMASS ASGYNFPSSS SEDIPNLDMK MADDPRYFSP  480
LSFDPFFSGL DDFTRPGFDI PENSFSFLPS GSSSFGQQNG DS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G47470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1196290.0AK119629.1 Oryza sativa Japonica Group cDNA clone:002-130-C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645086.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLJ3L6910.0J3L691_ORYBR; Uncharacterized protein
STRINGOB01G47470.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-152C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]