PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G46940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 167aa MW: 17999.4 Da PI: 11.7944 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.7e-08 | 108 | 144 | 11 | 47 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++++ ++G g+W+ I+r +Rt+ q+ s+ qky OB01G46940.1 108 LFLEGLDRYGRGDWRNISRFAVRTRTPTQVASHAQKY 144 89**********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.1E-11 | 106 | 149 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.2E-11 | 107 | 148 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 2.35E-6 | 107 | 145 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-5 | 107 | 143 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.0E-6 | 108 | 144 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MTVTTAAAAP ASPAARSAAA AYPGPKTSTG VDRKHLKPSP PFFLLSANFC SGSFSISRFV 60 SALPRQSGEA NKFLSAGRWG PPASHPDSNR LSACVKLTSS VPPCVRRLFL EGLDRYGRGD 120 WRNISRFAVR TRTPTQVASH AQKYFIRQAN AGARDSKRKS IHDITTP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G46940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003611 | 1e-133 | AP003611.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0423B08. | |||
GenBank | AP014957 | 1e-133 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-133 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3L638 | 1e-117 | J3L638_ORYBR; Uncharacterized protein | ||||
STRING | OB01G46940.1 | 1e-118 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 2e-24 | MYB family protein |