PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G46780.1

Common Name

LOC102723000

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 528aa MW: 58331.4 Da PI: 6.7997

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G46780.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.6e-11	217	247	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k err+++NReAAr+sR+RKka++++Le+ OB01G46780.1 217 AKTERRLAQNREAARKSRLRKKAYVQNLETS 247 799*************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.2E-7	214	290	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	216	260	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-7	217	248	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.48E-20	218	270	No hit	No description
SuperFamily	SSF57959	5.7E-7	218	261	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.3E-7	218	250	No hit	No description
PROSITE pattern	PS00036	0	221	236	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.9E-30	299	372	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MVQGEESSWR MAASAHERAI PLNQAFAYGV QAHASASVAA TPPASFLDFQ PAATAATYFG 60 ELEEALIHGA NAGVVDPGMI RADVHTKSAA TAGYLAARPP TLEIFPSWPM RQPQQLHSGN 120 SQSVGSTTDS SSAQNTMPQM ELVSPASIRA TSEQTQPGQE VMMVTTDDYS YKPGLAAASP 180 SFQQHQHQLQ QQQLHGGGDH DKRKHGSTRK DGKLVDAKTE RRLAQNREAA RKSRLRKKAY 240 VQNLETSRVR LQQIEQELQR ARSQGVFLGG CSAAGDMSSG AAMFDMEYAR WLDDDSKRLT 300 DLRGGLQAHL LDSNLGLVVE ECMQHYDELF QLKAALARSD VFHLLTGTWA TPAERCFLWM 360 GGFRPSELLK ILIHQLDPLT EQQMLGIYNL QQSSEQAEEA LAQGLQQLHQ SLADTVAAGT 420 LNDGPGVPNY MSLMAIALDK LASLESFYQQ ADNLRQQTLH QLRRILTTRQ AARCFLSIGE 480 YYRRLRALSN LWSSRPRENF IGAESVSPTG TELQPMHHQP QQNQYSGF

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MVQGEESSWR MAASAHERAI PLNQAFAYGV QAHASASVAA TPPASFLDFQ PAATAATYFG  60
ELEEALIHGA NAGVVDPGMI RADVHTKSAA TAGYLAARPP TLEIFPSWPM RQPQQLHSGN  120
SQSVGSTTDS SSAQNTMPQM ELVSPASIRA TSEQTQPGQE VMMVTTDDYS YKPGLAAASP  180
SFQQHQHQLQ QQQLHGGGDH DKRKHGSTRK DGKLVDAKTE RRLAQNREAA RKSRLRKKAY  240
VQNLETSRVR LQQIEQELQR ARSQGVFLGG CSAAGDMSSG AAMFDMEYAR WLDDDSKRLT  300
DLRGGLQAHL LDSNLGLVVE ECMQHYDELF QLKAALARSD VFHLLTGTWA TPAERCFLWM  360
GGFRPSELLK ILIHQLDPLT EQQMLGIYNL QQSSEQAEEA LAQGLQQLHQ SLADTVAAGT  420
LNDGPGVPNY MSLMAIALDK LASLESFYQQ ADNLRQQTLH QLRRILTTRQ AARCFLSIGE  480
YYRRLRALSN LWSSRPRENF IGAESVSPTG TELQPMHHQP QQNQYSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G46780.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006645055.1	0.0	PREDICTED: transcription factor TGA2-like isoform X2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	J3L622	0.0	J3L622_ORYBR; Uncharacterized protein
STRING	OB01G46780.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-120	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	102723000

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]