PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G46330.1
Common NameLOC102717862
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 296aa    MW: 32712.8 Da    PI: 6.8836
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G46330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.8e-103379347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE + + +a +q   +   +W+++a++++ ++t  +++++++++
     OB01G46330.1 33 AWTAEENKVFEKALAQIDRDapnRWELVAEMLP-RKTVIDVVNHYRDL 79
                     8*****************99*************.***********986 PP

2Myb_DNA-binding44.44e-14138182347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++ ++ + k++G g+W+ I+r++ + Rt+ q+ s+ qky
     OB01G46330.1 138 PWTEEEHKSFLMGLKKYGRGDWRNISRYFVTSRTPTQVASHAQKY 182
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.0292983IPR017884SANT domain
SMARTSM007174.6E-83082IPR001005SANT/Myb domain
SuperFamilySSF466897.86E-113287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-43377IPR009057Homeodomain-like
CDDcd001671.82E-73379No hitNo description
PfamPF002493.2E-73379IPR001005SANT/Myb domain
PROSITE profilePS5129417.657131187IPR017930Myb domain
SuperFamilySSF466891.1E-17133187IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-17134185IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-11135181IPR009057Homeodomain-like
SMARTSM007177.6E-12135185IPR001005SANT/Myb domain
CDDcd001671.37E-10138183No hitNo description
PfamPF002491.5E-11138182IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MMAEAFREVL PLPYFPGQPY WYLQERRGAG ADAWTAEENK VFEKALAQID RDAPNRWELV  60
AEMLPRKTVI DVVNHYRDLE NDVGSIEAGL VPFPHYSSLS PGSGFTLQDW DGSDGGFRRG  120
CCLKRGRAPD QERKKGVPWT EEEHKSFLMG LKKYGRGDWR NISRYFVTSR TPTQVASHAQ  180
KYFIRLSSGG KDKRRSSIHD ITTVNLPEDD ATNPSPSPPS VLTTASDQLG AIVEAKPAQP  240
PSLGTQRHFM SPLPGALGVS HPYGSVKLEP SASFLGGGTE PGLDEAILLQ MQCGQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-132798575RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G46330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402140.0FJ940214.1 Oryza sativa Japonica Group clone KCS611H03 Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646487.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-77DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLJ3L5X70.0J3L5X7_ORYBR; Uncharacterized protein
STRINGOB01G46330.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.17e-80MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]