PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G46330.1 | ||||||||
Common Name | LOC102717862 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 32712.8 Da PI: 6.8836 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.8 | 6.8e-10 | 33 | 79 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+eE + + +a +q + +W+++a++++ ++t +++++++++ OB01G46330.1 33 AWTAEENKVFEKALAQIDRDapnRWELVAEMLP-RKTVIDVVNHYRDL 79 8*****************99*************.***********986 PP | |||||||
2 | Myb_DNA-binding | 44.4 | 4e-14 | 138 | 182 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++ ++ + k++G g+W+ I+r++ + Rt+ q+ s+ qky OB01G46330.1 138 PWTEEEHKSFLMGLKKYGRGDWRNISRYFVTSRTPTQVASHAQKY 182 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.029 | 29 | 83 | IPR017884 | SANT domain |
SMART | SM00717 | 4.6E-8 | 30 | 82 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.86E-11 | 32 | 87 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-4 | 33 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.82E-7 | 33 | 79 | No hit | No description |
Pfam | PF00249 | 3.2E-7 | 33 | 79 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.657 | 131 | 187 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.1E-17 | 133 | 187 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.5E-17 | 134 | 185 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 135 | 181 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-12 | 135 | 185 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.37E-10 | 138 | 183 | No hit | No description |
Pfam | PF00249 | 1.5E-11 | 138 | 182 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MMAEAFREVL PLPYFPGQPY WYLQERRGAG ADAWTAEENK VFEKALAQID RDAPNRWELV 60 AEMLPRKTVI DVVNHYRDLE NDVGSIEAGL VPFPHYSSLS PGSGFTLQDW DGSDGGFRRG 120 CCLKRGRAPD QERKKGVPWT EEEHKSFLMG LKKYGRGDWR NISRYFVTSR TPTQVASHAQ 180 KYFIRLSSGG KDKRRSSIHD ITTVNLPEDD ATNPSPSPPS VLTTASDQLG AIVEAKPAQP 240 PSLGTQRHFM SPLPGALGVS HPYGSVKLEP SASFLGGGTE PGLDEAILLQ MQCGQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-13 | 27 | 98 | 5 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G46330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ940214 | 0.0 | FJ940214.1 Oryza sativa Japonica Group clone KCS611H03 Myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646487.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-77 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | J3L5X7 | 0.0 | J3L5X7_ORYBR; Uncharacterized protein | ||||
STRING | OB01G46330.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 7e-80 | MYB family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102717862 |
Publications ? help Back to Top | |||
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