PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G46120.1
Common NameLOC102712209
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 411aa    MW: 43986.7 Da    PI: 6.3752
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G46120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-18107152147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W+ +Ed ll ++v++lG+++W++Iar ++ gR++k+c++rw + 
     OB01G46120.1 107 KGPWSSDEDTLLSNLVEKLGPRNWTLIARGIP-GRSGKSCRLRWCNQ 152
                      79******************************.***********985 PP
2Myb_DNA-binding51.81.8e-16159203147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd ++  a++ +G++ W++Ia+ +  gRt++ +k++w++ 
     OB01G46120.1 159 RKPFTEEEDRIIMAAHAVHGNK-WAAIAKLLV-GRTDNAIKNHWNST 203
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.04102157IPR017930Myb domain
SuperFamilySSF466899.71E-30105200IPR009057Homeodomain-like
SMARTSM007171.2E-14106155IPR001005SANT/Myb domain
PfamPF002495.5E-17107152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-24108160IPR009057Homeodomain-like
CDDcd001677.37E-14109151No hitNo description
PROSITE profilePS5129422.306158208IPR017930Myb domain
SMARTSM007171.8E-15158206IPR001005SANT/Myb domain
PfamPF002491.8E-14159203IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-24161207IPR009057Homeodomain-like
CDDcd001671.32E-11161204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSSETAVSPP PPPPNQPAAD SAHSSPASMT DETHGAGVHP DDSQPHRSSS SSSSPPVAGE  60
ARVPARSQPQ PHHPSPPPSG EDEDDVAAAG QIAAGDAAGA ATEERVKGPW SSDEDTLLSN  120
LVEKLGPRNW TLIARGIPGR SGKSCRLRWC NQLDPQVKRK PFTEEEDRII MAAHAVHGNK  180
WAAIAKLLVG RTDNAIKNHW NSTLRRRYCT GGRCTQGGVV ERAIPERPRS VSEEPWPLGN  240
LSSLNVREAM EAPAQTVSES YVGALQTADQ NCRTEVVDPP YLARPVAKVG AFKPYNVGPG  300
QSSQKEKLGF ATRFDSNLQA FKPENGVGKF VYPTSFAADV PNKCGHGCCT SHGQLRENSL  360
LGPEFNEFED HPPISDSSFA SLVSEISSIA WMKSGLQSSD TNNIVQSFPP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-401062076107B-MYB
1gv2_A5e-401042071104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G46120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085820.0AK108582.1 Oryza sativa Japonica Group cDNA clone:002-146-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645018.10.0PREDICTED: uncharacterized protein LOC102712209
TrEMBLJ3L5V60.0J3L5V6_ORYBR; Uncharacterized protein
STRINGOB01G46120.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.16e-81myb domain protein 109