PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G45670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 242aa MW: 26498.9 Da PI: 10.064 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.4 | 2.5e-32 | 94 | 150 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 Dgy+WrKYGqK++k++++prsYY+Cts++C++kk+ve+s++dp+++++tYeg+H+h OB01G45670.1 94 ADGYKWRKYGQKSIKNNPHPRSYYKCTSSRCSAKKHVEKSTDDPEMLIVTYEGSHHH 150 6*******************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-31 | 84 | 151 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.105 | 88 | 153 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-26 | 91 | 152 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-35 | 93 | 152 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 95 | 150 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGEALRAQAA AATTDEVAGA AVWPGELDEH LIGELLGDDD DGALLFPAAD QHSSDQRYSL 60 GAVSSEAADA PRRVGVESKY TSKVRSCGGG KMPADGYKWR KYGQKSIKNN PHPRSYYKCT 120 SSRCSAKKHV EKSTDDPEML IVTYEGSHHH GPHPSSPHLA QPPPSSSSAA AXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXTTTR RRRGARRAAP CPRGSLVRRR RRLDIGVVRG 240 AR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-21 | 95 | 150 | 19 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-21 | 95 | 150 | 19 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 231 | RRRGARRAAPCPRGSLVRRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G45670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101616 | 3e-95 | FP101616.1 Phyllostachys edulis cDNA clone: bphyem119j23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3L5R1 | 1e-142 | J3L5R1_ORYBR; Uncharacterized protein | ||||
STRING | OB01G45670.1 | 1e-143 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 7e-22 | WRKY DNA-binding protein 49 |