PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G45570.1 | ||||||||
Common Name | LOC102703735 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 592aa MW: 64357.5 Da PI: 7.6565 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 65 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + ++Wk+Ia++++ Rt+ qc +rwqk+l OB01G45570.1 65 KGGWTPEEDETLRKAVEVYNARNWKKIAECFP-YRTEVQCLHRWQKVL 111 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 60.9 | 2.8e-19 | 117 | 163 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++vk++G+ W+ Ia+ ++ gR +kqc++rw+++l OB01G45570.1 117 KGPWTPEEDDQIINLVKEYGPTKWSVIAKALP-GRIGKQCRERWHNHL 163 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 57.7 | 2.7e-18 | 169 | 212 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT+eE+ l++a+k++G++ W+ Ia+ ++ gRt++++k++w++ OB01G45570.1 169 KDAWTAEEEVALINAHKMYGNK-WAEIAKVLP-GRTDNSIKNHWNS 212 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.364 | 60 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-16 | 64 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 65 | 111 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.59E-16 | 66 | 121 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 67 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.43E-15 | 68 | 111 | No hit | No description |
PROSITE profile | PS51294 | 31.51 | 112 | 167 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.45E-32 | 114 | 210 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-19 | 116 | 165 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-18 | 117 | 163 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-16 | 119 | 163 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-27 | 129 | 170 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.429 | 168 | 218 | IPR017930 | Myb domain |
SMART | SM00717 | 8.3E-18 | 168 | 216 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 169 | 212 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-24 | 171 | 218 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.31E-14 | 171 | 214 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MGAMAMVEQE GCVENRQPLA ASSSSVSDGS SYGGGGLAQM SPPVSSSANS ISGLRRTSGP 60 IRRAKGGWTP EEDETLRKAV EVYNARNWKK IAECFPYRTE VQCLHRWQKV LNPELIKGPW 120 TPEEDDQIIN LVKEYGPTKW SVIAKALPGR IGKQCRERWH NHLNPDIRKD AWTAEEEVAL 180 INAHKMYGNK WAEIAKVLPG RTDNSIKNHW NSSLRKKLDI YNTSNNVAVT KLPVHDKFKD 240 KPKLVAMEGH LDLNKAPNIN LKDQHGTARR SNCSGFLSVS TLPTAQPLTS HEASLVDCSA 300 VTLVAQALES DSVRDKCVEI DSIHEKGLEV NSVPDPTGNS GTIQLEAAPA KAEPELSLKN 360 GACSTLGPLC YQIPNIEDVA PASSSLFSDC LTANHTSEHC GDGISSPIGC ITPSPTKGKV 420 SSQLSVDSIL KSAANSFPDT PSILRRRKRD KSTPVSASEV KISGVSTDNF YTPTGMEPAT 480 ATPESFKTSS FMSVGSLDGL STSVRSFDVS PQYRARSKRM AVMKAVEKQL DFSSYGVDTC 540 GSEILNSPCQ YSQSTLSITK APKMKEKELG EHVVQLENLT NNFAHTTNLD VT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-73 | 64 | 218 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-73 | 64 | 218 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 445 | 450 | RRKRDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G45570.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ940212 | 0.0 | FJ940212.1 Oryza sativa Japonica Group clone KCS635B12 Myb-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644989.1 | 0.0 | PREDICTED: myb-related protein B | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | J3L5Q1 | 0.0 | J3L5Q1_ORYBR; Uncharacterized protein | ||||
STRING | OB01G45570.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-106 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Entrez Gene | 102703735 |
Publications ? help Back to Top | |||
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