PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G45570.1
Common NameLOC102703735
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 592aa    MW: 64357.5 Da    PI: 7.6565
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G45570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-1765111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av+ +  ++Wk+Ia++++  Rt+ qc +rwqk+l
     OB01G45570.1  65 KGGWTPEEDETLRKAVEVYNARNWKKIAECFP-YRTEVQCLHRWQKVL 111
                      688*****************************.************986 PP

2Myb_DNA-binding60.92.8e-19117163148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++++vk++G+  W+ Ia+ ++ gR +kqc++rw+++l
     OB01G45570.1 117 KGPWTPEEDDQIINLVKEYGPTKWSVIAKALP-GRIGKQCRERWHNHL 163
                      79******************************.*************97 PP

3Myb_DNA-binding57.72.7e-18169212146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT+eE+  l++a+k++G++ W+ Ia+ ++ gRt++++k++w++
     OB01G45570.1 169 KDAWTAEEEVALINAHKMYGNK-WAEIAKVLP-GRTDNSIKNHWNS 212
                      679*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.36460111IPR017930Myb domain
SMARTSM007171.0E-1664113IPR001005SANT/Myb domain
PfamPF002491.0E-1565111IPR001005SANT/Myb domain
SuperFamilySSF466891.59E-1666121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-2467128IPR009057Homeodomain-like
CDDcd001673.43E-1568111No hitNo description
PROSITE profilePS5129431.51112167IPR017930Myb domain
SuperFamilySSF466893.45E-32114210IPR009057Homeodomain-like
SMARTSM007178.3E-19116165IPR001005SANT/Myb domain
PfamPF002491.5E-18117163IPR001005SANT/Myb domain
CDDcd001671.17E-16119163No hitNo description
Gene3DG3DSA:1.10.10.602.2E-27129170IPR009057Homeodomain-like
PROSITE profilePS5129423.429168218IPR017930Myb domain
SMARTSM007178.3E-18168216IPR001005SANT/Myb domain
PfamPF002491.7E-16169212IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-24171218IPR009057Homeodomain-like
CDDcd001673.31E-14171214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MGAMAMVEQE GCVENRQPLA ASSSSVSDGS SYGGGGLAQM SPPVSSSANS ISGLRRTSGP  60
IRRAKGGWTP EEDETLRKAV EVYNARNWKK IAECFPYRTE VQCLHRWQKV LNPELIKGPW  120
TPEEDDQIIN LVKEYGPTKW SVIAKALPGR IGKQCRERWH NHLNPDIRKD AWTAEEEVAL  180
INAHKMYGNK WAEIAKVLPG RTDNSIKNHW NSSLRKKLDI YNTSNNVAVT KLPVHDKFKD  240
KPKLVAMEGH LDLNKAPNIN LKDQHGTARR SNCSGFLSVS TLPTAQPLTS HEASLVDCSA  300
VTLVAQALES DSVRDKCVEI DSIHEKGLEV NSVPDPTGNS GTIQLEAAPA KAEPELSLKN  360
GACSTLGPLC YQIPNIEDVA PASSSLFSDC LTANHTSEHC GDGISSPIGC ITPSPTKGKV  420
SSQLSVDSIL KSAANSFPDT PSILRRRKRD KSTPVSASEV KISGVSTDNF YTPTGMEPAT  480
ATPESFKTSS FMSVGSLDGL STSVRSFDVS PQYRARSKRM AVMKAVEKQL DFSSYGVDTC  540
GSEILNSPCQ YSQSTLSITK APKMKEKELG EHVVQLENLT NNFAHTTNLD VT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-73642185159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-73642185159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445450RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G45570.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402120.0FJ940212.1 Oryza sativa Japonica Group clone KCS635B12 Myb-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644989.10.0PREDICTED: myb-related protein B
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLJ3L5Q10.0J3L5Q1_ORYBR; Uncharacterized protein
STRINGOB01G45570.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-106myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]