PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G45370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 186aa MW: 19011.9 Da PI: 4.5993 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00044 | 104 | 126 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg Fs L H+r+H OB01G45370.1 104 HECTVCGLEFSMGQALGGHMRRH 126 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-4 | 100 | 129 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.92E-6 | 100 | 130 | No hit | No description |
Pfam | PF13912 | 4.6E-12 | 103 | 128 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.949 | 104 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 106 | 126 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MASALPFRFV KIYTYSCQIY GQSKRKLLGN SFGFVGDDNH ERGSGEQGDG EPTGARQRAA 60 LAVVAGADGV DAGGEEGAGG GGGVRVQDVQ QAVPAGGRGG ARVHECTVCG LEFSMGQALG 120 GHMRRHRGEP GAAVVITDTD SGGTSVPQPP AEAMPDLNYP PLEDAGDGQE SSSGRSSEPE 180 LLNLLV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G45370.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 4e-47 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
GenBank | CT831398 | 4e-47 | CT831398.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN012H15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690352.1 | 2e-58 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | J3L5N1 | 1e-130 | J3L5N1_ORYBR; Uncharacterized protein | ||||
STRING | OB01G45370.1 | 1e-131 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 5e-11 | C2H2 family protein |