PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G43640.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 372aa    MW: 42228.8 Da    PI: 10.8878
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G43640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.71.8e-1071127155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s y+GV++++ +g+++A+++d   +  + ++k+ + g ++t+e Aa+ ++ a++k++g
  OB01G43640.1  71 SIYRGVTRHRGTGKYEAHLWDkHGWspD-RTKKGRQGAYDTEEAAARTYDLAALKIWG 127
                   57*******************7766433.5677777*******************987 PP
2AP251.13.3e-16170221155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV  ++ +grW+A+I         +k+ +lg+f+t eeAa+a++ a+ +++g
  OB01G43640.1 170 SKYRGVAKHHHNGRWEARIGRaE----GKKYLYLGTFDTQEEAARAYDLAAIQFRG 221
                   89****************99955....26***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1371137IPR016177DNA-binding domain
CDDcd000182.92E-1271137No hitNo description
PfamPF008471.1E-771127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-1272135IPR001471AP2/ERF domain
PROSITE profilePS5103217.47772135IPR001471AP2/ERF domain
SMARTSM003803.9E-1672141IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18170230IPR016177DNA-binding domain
CDDcd000182.39E-22170230No hitNo description
PfamPF008472.7E-12170221IPR001471AP2/ERF domain
PROSITE profilePS5103219.309171229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-20171229IPR001471AP2/ERF domain
SMARTSM003806.4E-29171235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVSMRKKKKT AFAAAAAAAA ATTPLSPSWS SSASSCIVPA CAEGSEKKNK RKHRKRAKNG  60
AGDAAPRRGS SIYRGVTRHR GTGKYEAHLW DKHGWSPDRT KKGRQGAYDT EEAAARTYDL  120
AALKIWGSGH AMNFPIDTYR QERERMQRMT REEYLATLRR KSSGFSRGLS KYRGVAKHHH  180
NGRWEARIGR AEGKKYLYLG TFDTQEEAAR AYDLAAIQFR GRSAITNFDA RCYMDQLQPP  240
PXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS AAAVVSYAAA  360
TISSLASGRW WH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14654KKNKRKHRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G43640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851211e-132AY685121.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D10 (AP2D10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690234.11e-136PREDICTED: ethylene-responsive transcription factor WRI1-like
TrEMBLJ3L5581e-174J3L558_ORYBR; Uncharacterized protein
STRINGOB01G43640.11e-174(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-65AP2 family protein