PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G43630.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 401aa MW: 43087.4 Da PI: 9.9288

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G43630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.3	2.1e-15	331	378	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN +Lk + +el OB01G43630.1 331 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENGRLK-RQKELD 378 79***************************************9.444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-14	326	374	No hit	No description
SMART	SM00338	1.6E-11	327	399	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.427	329	374	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.31E-11	331	376	No hit	No description
CDD	cd14707	1.35E-24	331	387	No hit	No description
Pfam	PF00170	9.9E-13	331	374	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	334	349	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MAPLLQLFSS FPHKYSCSAL FSKVQTFSLQ QNDYKNKLFS GSLPRGGSPA QAVGPVGSWG 60 ARQWRLRPEA GAGGIAAGAA AQRGQMQMQG LGRQGSLCSL TLDEVQSHLG EPLHSMNLDE 120 LLRSVFSDGV AAADGATTSQ RHEPGSGLLR QGSIAMPPEL SKKTVDEVWK GIQAAPKRNA 180 EAGGGRRRRE RQPTLGEVTL EDFLVKAGVV TQGSLKDLGD AGNVVDPVGR AAAATGAVDL 240 ASGAQWMDQY NQQIASADAH HHGQQSVQGS YMSNRLVPQP LNVGLGPGAI LESSYSDGQT 300 SSGMIGGISD SQTPGRKRGM SGDVADKLME RRQKRMIKNR ESAARSRARK QAYTNELENK 360 VSRLEEENGR LKRQKELDEL LCAVPVPEPK YQLRRTNSAD F

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MAPLLQLFSS FPHKYSCSAL FSKVQTFSLQ QNDYKNKLFS GSLPRGGSPA QAVGPVGSWG  60
ARQWRLRPEA GAGGIAAGAA AQRGQMQMQG LGRQGSLCSL TLDEVQSHLG EPLHSMNLDE  120
LLRSVFSDGV AAADGATTSQ RHEPGSGLLR QGSIAMPPEL SKKTVDEVWK GIQAAPKRNA  180
EAGGGRRRRE RQPTLGEVTL EDFLVKAGVV TQGSLKDLGD AGNVVDPVGR AAAATGAVDL  240
ASGAQWMDQY NQQIASADAH HHGQQSVQGS YMSNRLVPQP LNVGLGPGAI LESSYSDGQT  300
SSGMIGGISD SQTPGRKRGM SGDVADKLME RRQKRMIKNR ESAARSRARK QAYTNELENK  360
VSRLEEENGR LKRQKELDEL LCAVPVPEPK YQLRRTNSAD F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	191	GRRRRERQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G43630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003247	0.0	AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02.
GenBank	AP003570	0.0	AP003570.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0432B10.
GenBank	AP004331	0.0	AP004331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0085D07.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627754.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	7e-80	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	J3L557	0.0	J3L557_ORYBR; Uncharacterized protein
STRING	OB01G43630.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2707	38	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	4e-74	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]