PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G42280.1
Common NameLOC102701492
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 287aa    MW: 30594.2 Da    PI: 9.1462
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G42280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014466223
                  EETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                  +C+ Cg+ F  ++ L+ H  + H
  OB01G42280.1 44 SCHRCGEQFGKWEALEAHHLSkH 66
                  7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002804566IPR007087Zinc finger, C2H2
SuperFamilySSF563998.82E-2468286No hitNo description
Gene3DG3DSA:3.90.228.101.9E-1292263IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRCTPPRSPN LLLDRDGAAP GVTAHRASCE DAVKSGGKGA VGLSCHRCGE QFGKWEALEA  60
HHLSKHAVTE LVEGDSSRKI VEIICRTSLL KSESSCVRIE RVFKVHNTQR TLARFEEYRE  120
AVKLKASKLP KKHPRCLADG NELLRFHGAT LSCALGGAAG SSSSLCASDK CAVCRIIRHG  180
FSARKEGKAG VGVFTTSTSG RAYESIEVPG VGGGGGGDDP AATRRALLVC RVIAGRVHKP  240
LENLKEFAGQ TGFDSLAGKV GPYSNIEELY LLNPRALLPC FVVICKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G42280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710140.0AK071014.1 Oryza sativa Japonica Group cDNA clone:J023079O17, full insert sequence.
GenBankAK1043110.0AK104311.1 Oryza sativa Japonica Group cDNA clone:001-017-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644817.10.0PREDICTED: uncharacterized protein LOC102701492
TrEMBLJ3L4S20.0J3L4S2_ORYBR; Uncharacterized protein
STRINGOB01G42280.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-105C2H2 family protein