PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G40680.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 536aa    MW: 58772 Da    PI: 8.0189
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G40680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.13.4e-1374112241
           TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                   +kk CnCk+skClk+YCeCfa+g++C+  C+C++C+N+ +
  OB01G40680.1  74 KKKCCNCKHSKCLKLYCECFASGVYCDG-CNCSNCFNNVK 112
                   799*************************.********987 PP
2TCR51.12.7e-16158197140
           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                   k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  OB01G40680.1 158 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 197
                   589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-1473113IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.61274198IPR005172CRC domain
PfamPF036381.4E-975110IPR005172CRC domain
SMARTSM011148.4E-20158199IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-12161196IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MTGGTPITCG PTCHGITQQS RQHFPENTTP RMTGRITSND TDAAEEPTPP PTKPESPKPP  60
RARLYEGKDG TPTKKKCCNC KHSKCLKLYC ECFASGVYCD GCNCSNCFNN VKNEIARREA  120
IDATLERNPD AFRPKIGSSP HANRNNMEAV GDLPLVGKHN KGCHCKKSGC LKKYCECFQA  180
NILCSENCKC MDCKNFEGSE ERKALYQGDH KNSIHMQQAA NAAVNGAIGA AAFSSPSTSR  240
KRKHIDPSLD HLAKENGAHK TSHLPQKNGV ASDGPLPMSQ PMHPPTMGPF KVTYRPLLAD  300
IVQQEDVKDL CKLLVVVSGK TAKAYAGKKA QEDKVVERED ERGGQREDEV GSSLASTNHD  360
REENSKDPDY QKATTDNPST GGTHAGKASL EESKHDNIDD QKSNRPMSPG TLALMCDEQD  420
TMFTTSQNVV TQPAVPVNQN QSELYAEQER CVLTEFRDCL RKLVTYGRMK EEKYSMAIKS  480
EVPGHPMQAN GVSRIPYSKD VDVPVVKTFL QGSSRHPVAG NTATGHLDKK PKHENT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-297820514130Protein lin-54 homolog
5fd3_B4e-297820514130Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G40680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1221120.0AK122112.1 Oryza sativa Japonica Group cDNA clone:J033127O09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689950.10.0PREDICTED: protein tesmin/TSO1-like CXC 5, partial
SwissprotQ9SZD11e-143TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLJ3L4B20.0J3L4B2_ORYBR; Uncharacterized protein
STRINGOB01G40680.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-110Tesmin/TSO1-like CXC domain-containing protein