PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G39790.1
Common NameLOC102715622
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 440aa    MW: 49393.5 Da    PI: 5.255
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G39790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.4e-35141042101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++++ ++ w++ g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF+++ F +g+++ l++i+
  OB01G39790.1  14 FLSKTYEMVDDPSTDAVVAWTSAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEDFIRGQRHRLKNIH 101
                   9***************************************************************9998.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
  OB01G39790.1 102 RRK 104
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.3E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.0E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MMEGAGGGGS LPPFLSKTYE MVDDPSTDAV VAWTSAGTSF VVANQPEFCR DLLPKYFKHN  60
NFSSFVRQLN TYGFRKVDPE QWEFANEDFI RGQRHRLKNI HRRKPIFSHS SHTQGVGPLT  120
ENERRDYEDE IERLKCDNAA LSSELQQNTL KKLNMEKRMQ TLEEKLFVVE DQQRNLISYV  180
REIVKAPGFL SSFVQQQDNH RKKRRLPIPI SFHEDANTQE NPIMPCDLTN SPAQAFYRES  240
FDKMESSLNS LENFLREASE EFGNDISYDD GAAAGPSSTV VLTEIHSPGE SDPRVSSPPT  300
KMRTSAGAVD SHSSHDVAES TSCAESPLPQ MHSRVDTRAK VSEIDVNSEP AVTETGPSRD  360
QPAEGPPAVT PGANDGFWQQ FLTEQPGSSD AHQEAQSERR DGGNKVDVMK SGDRQHFWWG  420
KKNVEQITEK LGHLTSTEKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-27410319129Heat shock factor protein 1
5d5v_B2e-27410319129Heat shock factor protein 1
5d5v_D2e-27410319129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G39790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098560.0AK109856.1 Oryza sativa Japonica Group cDNA clone:002-148-G05, full insert sequence.
GenBankAY3444910.0AY344491.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644706.10.0PREDICTED: heat stress transcription factor A-4b
SwissprotQ94J160.0HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLJ3L4230.0J3L423_ORYBR; Uncharacterized protein
STRINGOB01G39790.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.12e-93HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]