PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G38820.1 | ||||||||
Common Name | LOC102702893 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 234aa MW: 26208.7 Da PI: 7.5628 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.9 | 1.6e-33 | 27 | 119 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k++++++d++++ +++w + gn+f+vld+ f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ ++ weF+h+sF +g+ +ll +i OB01G38820.1 27 FVAKTFHMVSDPSTNAVVRWGDAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDR---------WEFAHESFLRGQAQLLPRIV 114 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 rkk++ OB01G38820.1 115 RKKKK 119 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.9E-36 | 21 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.2E-51 | 23 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.17E-32 | 24 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.0E-17 | 27 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.3E-29 | 27 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-17 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 66 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-17 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGSECKVHQL HAAGDSDGGG PGAVAPFVAK TFHMVSDPST NAVVRWGDAG NTFLVLDPAA 60 FSDFLLPSYF KHRNFASFVR QLNTYGFRKV DPDRWEFAHE SFLRGQAQLL PRIVRKKKKA 120 SGRELCEEGE EVRGTIEAVQ RLRDEQRGME EELQAMDQRL RTAESRPGQM MAFLSKLADD 180 PGVVLRAMLA KKEELSAAGN DGPDPCKRRR IGADGGRDIF TELDLDPWRV FERK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-27 | 19 | 121 | 12 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 210 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G38820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066316 | 0.0 | AK066316.1 Oryza sativa Japonica Group cDNA clone:J013066G03, full insert sequence. | |||
GenBank | AY344493 | 0.0 | AY344493.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015689817.1 | 1e-173 | PREDICTED: heat stress transcription factor C-1b-like | ||||
Swissprot | Q942D6 | 1e-142 | HFC1B_ORYSJ; Heat stress transcription factor C-1b | ||||
TrEMBL | J3L3S6 | 1e-171 | J3L3S6_ORYBR; Uncharacterized protein | ||||
STRING | OB01G38820.1 | 1e-172 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11298 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 6e-59 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Entrez Gene | 102702893 |
Publications ? help Back to Top | |||
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