PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G37330.1
Common NameLOC102704288
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 286aa    MW: 31431.9 Da    PI: 10.0162
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G37330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.3e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l ++v ++G+g W+tI +          R+  ++k++w+++
     OB01G37330.1  5 KQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                     79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.498160IPR017930Myb domain
SuperFamilySSF466898.22E-16258IPR009057Homeodomain-like
SMARTSM007175.5E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-14556IPR009057Homeodomain-like
PfamPF002491.2E-8556IPR001005SANT/Myb domain
CDDcd116606.93E-20656No hitNo description
SMARTSM005262.4E-797174IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150419.578111179IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467856.53E-11117183IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.6E-10117180IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.0E-6117171IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRRGV LKHGPGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA  60
SGLGSRDKLK VPRTKGPSSS TSPSSQTPLL LPSNKVAEAL PSADPEKNSQ DGKIPNSMVM  120
EALHEIGDPN GSDIEAICHY IEQRHEVQAN FRRLLTAKLR RLIAAKKIEK IDRAYKITES  180
YGAKSLLATK SPSPKKDSAK PLKASQKGSL AVKSTALDAA AVAAMKVADT EAKAHLANEH  240
MMEAERVLKL AEETESLVTL ATEIYERCSR GEVLTIMQVA QSKFEF
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G37330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4957970.0AJ495797.1 Oryza sativa Japonica Group mRNA for MYB28 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644588.20.0PREDICTED: single myb histone 3 isoform X2
SwissprotQ6WLH41e-107SMH3_MAIZE; Single myb histone 3
TrEMBLJ3L3C70.0J3L3C7_ORYBR; Uncharacterized protein
STRINGOB01G37330.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.24e-49MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]