PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G37060.1
Common NameLOC102700570
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 302aa    MW: 33073.9 Da    PI: 6.3444
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G37060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.3e-161865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
     OB01G37060.1 18 KGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGLQRCGKSCRLRWINYL 65
                     678*******************************************97 PP
2Myb_DNA-binding483e-1571115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ 
     OB01G37060.1  71 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 115
                      899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8431365IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-231368IPR009057Homeodomain-like
SuperFamilySSF466891.2E-2816112IPR009057Homeodomain-like
SMARTSM007172.2E-121767IPR001005SANT/Myb domain
PfamPF002492.0E-141865IPR001005SANT/Myb domain
CDDcd001671.04E-112165No hitNo description
PROSITE profilePS5129424.51766120IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2569120IPR009057Homeodomain-like
SMARTSM007172.2E-1470118IPR001005SANT/Myb domain
PfamPF002491.4E-1371115IPR001005SANT/Myb domain
CDDcd001672.36E-1073113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRHACSAAA GVQQKLRKGL WSPEEDEKLY NHIIRYGVGC WSSVPKLAGL QRCGKSCRLR  60
WINYLRPDLK RGSFSQQEED AIVGLHEILG NRWSQIASHL PGRTDNEIKN FWNSCLKKKL  120
RQRGIDPSTH KPISASVVAA AAALDPSPED QKPAATADGF ALKQQQVFDP FPVTDSFGGG  180
FDSTGMAMYG HLGGKNAAGF VDYSSVLDVS ENLGYGESSS NSSNWNCGVG APEVNNALES  240
EALHWATESK AEPFVGYGGE GDTMEHKFVL PCHGQQEQSM PHFDFDVGRG MVVGDFNLEY  300
FR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28161205108B-MYB
1h8a_C6e-281612025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G37060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117820.0AK111782.1 Oryza sativa Japonica Group cDNA clone:J023084H22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644576.10.0PREDICTED: myb-related protein Hv33-like
SwissprotP200271e-105MYB3_HORVU; Myb-related protein Hv33
TrEMBLJ3L3A00.0J3L3A0_ORYBR; Uncharacterized protein
STRINGOB01G37060.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-76myb domain protein 86