PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G36020.1
Common NameLOC102699742
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 314aa    MW: 33725 Da    PI: 8.2144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G36020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEdell  +v+ +G+g +W + +++ g++R++k+c++rw++yl
     OB01G36020.1 14 RGPWSPEEDELLRSYVRSHGTGgNWIALPQKAGLNRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding38.13.5e-1271111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       T++Ed ++  + +  G++ W+ Ia++++ gRt++++k++w++
     OB01G36020.1  71 YTEQEDRIIFSLYNSIGSR-WSVIASRLP-GRTDNDVKNYWNT 111
                      69*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.218966IPR017930Myb domain
SuperFamilySSF466896.53E-2811109IPR009057Homeodomain-like
SMARTSM007178.4E-131364IPR001005SANT/Myb domain
PfamPF002491.4E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-241569IPR009057Homeodomain-like
CDDcd001678.89E-101662No hitNo description
SMARTSM007171.9E-1267115IPR001005SANT/Myb domain
PROSITE profilePS5129414.06567117IPR017930Myb domain
PfamPF002493.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2270116IPR009057Homeodomain-like
CDDcd001671.15E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPE EDELLRSYVR SHGTGGNWIA LPQKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDRIIF SLYNSIGSRW SVIASRLPGR TDNDVKNYWN TKLKKKAMAM  120
HHQPQPQQQQ QQQHYHHQRQ QHRGGADGAR VTLVSTPPAP QSQCASMQPS PASASSVATT  180
TSGDACSFGV AAMYSPSPSQ VPQAPTLAGY NSVAAAAAAA AAGAQHSPLA ELICQAPPPI  240
AADCWPSCVT LDDVFLPELV GAGEFPNGNL FGGFGPLLQD RSSLELSACY FPNALAAEMW  300
TSADKPAGLC HSLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G36020.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033471e-144AP003347.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0445E10.
GenBankAP0034521e-144AP003452.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0478H03.
GenBankAP0149571e-144AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-144CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646212.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLJ3L2Z60.0J3L2Z6_ORYBR; Uncharacterized protein
STRINGOB01G36020.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-70myb domain protein 36