PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB01G35490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 196aa MW: 21469.8 Da PI: 7.5712 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 78.3 | 1.7e-24 | 22 | 147 | 8 | 126 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk..k 96 hPtd+elv++yL+++ve+ k+ ++++e+d+y ++P+dL k + ++ wyfF++ + k++ g+r+ r + ++g W++ k+v+ + OB01G35490.1 22 HPTDQELVTKYLRRHVESGKNLW-RFVHEADVYAADPEDLTtKyapaVAGDGSAAWYFFTTVRPKSEGGQRRARaVGDDGCWHSEAGAKDVVLGvpS 117 9*****************99666.89**************84356633333566********************55569****99999999987677 PP NAM 97 gelvglkktLvfykgrapkgektdWvmhey 126 + +g ++ + f ++r+ + ++t W+m e OB01G35490.1 118 PRPIGRRQAFSFVTKRDGQRVRTGWIMVEI 147 888************************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 31.822 | 15 | 169 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.92E-34 | 19 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-15 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 196 aa Download sequence Send to blast |
MAASSSSSRP DEEEPSGDFW SHPTDQELVT KYLRRHVESG KNLWRFVHEA DVYAADPEDL 60 TTKYAPAVAG DGSAAWYFFT TVRPKSEGGQ RRARAVGDDG CWHSEAGAKD VVLGVPSPRP 120 IGRRQAFSFV TKRDGQRVRT GWIMVEIGLG YAQQDVSSNE LVLCKVYRSP RARPAATKSK 180 TADEPASDDV KPAVAA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-13 | 19 | 167 | 19 | 166 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB01G35490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646197.1 | 1e-143 | PREDICTED: NAC domain-containing protein 41-like | ||||
TrEMBL | J3L2U3 | 1e-141 | J3L2U3_ORYBR; Uncharacterized protein | ||||
STRING | OB01G35490.1 | 1e-142 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4011 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02450.1 | 8e-19 | NAC domain containing protein 35 |