PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G35260.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1787aa MW: 200034 Da PI: 5.1915

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G35260.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52	1.2e-16	4	53	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k OB01G35260.1 4 SPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 53 789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	5.4E-10	1	58	IPR001356	Homeobox domain
PROSITE profile	PS50071	15.094	1	54	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-14	3	53	IPR009057	Homeodomain-like
CDD	cd00086	9.70E-13	3	54	No hit	No description
Pfam	PF00046	2.0E-14	4	53	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.5E-15	4	53	IPR009057	Homeodomain-like
SMART	SM00571	1.7E-14	573	632	IPR018501	DDT domain
PROSITE profile	PS50827	14.537	573	632	IPR018501	DDT domain
Pfam	PF02791	1.5E-13	575	629	IPR018501	DDT domain
Pfam	PF05066	9.3E-16	749	817	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.1E-9	966	1008	IPR028942	WHIM1 domain
Pfam	PF15613	3.3E-11	1143	1215	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1787 aa Download sequence Send to blast
MMKSPYQLEV LEKTYAVEQY PSETLRAELS AKIGLSDRQL QMWFCHRRLK DRKPPTKRQR 60 REEEAAAGPL MAPPPVLPPP TLPLASGELL ISGSSPYDEP PPMPPVHSRR GAGRSSAVPR 120 LSAPDIGRRY YEPLPVMLPP PVSSMQLTTS ELRVIHSVES QLGEPLREDG PVLGVEFDPL 180 PPGSFGAPIV PEQPKQPVRS YDTKIYSRHD SNLLKASAFF PSVEHPFVPN SIGGKRKLMV 240 GNPPVHPHAG SRAVHEYQFL PEQPSDRYEG SSRSRYYDTP VEASNSRMSS HTPGSQLLHG 300 SEEAALGYPF QGQISGSGLL PQSGRPEVLP AVPTDYEMIQ SNSNLNSVPV EGQYGISQVA 360 GFENSLLPSE RRAYHDEDGS RVDRKRKHNE EAKIAKEVEA HEKRIRKELE KQDMMKRKRE 420 EQMRKEMERH DRERRKEEER LLRERQREQE RFQREQRREH ERMEKFMQKQ SRRAEKQRQK 480 EELRKEKEAA RQKAANERAT ARRIAREYME LVEDERLELM ELAAQSKGLP SMLYLDSDTL 540 QQLDSFRGML SPFPPEVVRL KVPFSIKPWT VSEDNVGNLL MVWKFSITFA DFLGLSSVTL 600 DEFIQSLHDY DSRFLGELHI ALLKSIIKDI EDVSRTPSVA LGVNPGGGHP QIVEGAYAWG 660 FNIRSWQRHL NVLTWPEILR QLALSAGLGP QLKKRDAEDV YSRDDNEGHD GKIVISTLRN 720 GSAAVNAAAL MKERGYTNRR RSRHRLTPGT VKFAAFHVLS LEGSKGLTIL EVAERIQESG 780 LRDLTTSKTP EASISAALSR DTKLFERTAP STYCVKSPYR KDPADSEIVL SSAREKIRAF 840 HNVLSDSDAE KEADDAERDE DSECDDADDD PDGDDVNIDV GDGKDPLIGV KEQDGVPIMT 900 AVNSTQRVEE RVGTLTQPSA FTKSGKVDPN PSLDTSSDSP ARETSDYHEI APSDAEDQEI 960 DESNQGESWV QGLAEGDYCD LSVEERLNAL VALVGIANEG NSIRAVLEER LESANALKKQ 1020 MWAEAQHDKR RTKEEFASRV QYNSNMNLKA DVNQENGTES TTTPCRNVDK DNDGNAGVVN 1080 NNNEIIDHNS NAVNTSYERN GSGQDITATA DTLSVQQYAY ADKTRSQLRS YIGHRAEQLF 1140 VYRSLPLGQD RRRNRYWQCS TSASPNDPGS GRIFFESRDG YWRVLDSEEA FDSLVASLDT 1200 RGSREAQLHS MLQRIESTFK EAIKRKNGAV VEQSAGRYLK NGAMEMIRAS SRSEFGSPSS 1260 SLSGVTSDSA MAFSDSFKIE LGRNDVEKTA ISKRADGFIR WMWRECNDLK LTCAMKCGKK 1320 RCSELIHSCN YCYQIYLIEE RHCSSCHMIF KSIHNFSDHT SQCEEKRRTD HNWKMQTADH 1380 SVPVGMRLLK LQLSTIEASI PPEAIQPFWT DGYRKSWGVK LHSTASLEEI FQMLTLLEGA 1440 IKRDYLSSDF ETTNELLNIN TQDTASQNHV GLSGSGASLP WLPATTAAIA LRTLDLDSAV 1500 SYIQNQKMER DGGDFMKAPS RFAVVKNAQE LEPLEATGFD LYDGRLAAVS GRRGRGRGSR 1560 GGGSRGGRGR SRGGRVPRGI SSSSRIGFKD ENESSRKNAR RGRTTRGRRR GRRTVRPRQP 1620 SEGRGRSIPK ENLLGSFSML SNAKPATVEE SPRSSGADEW GLENRRPYIE GDENSSGSQL 1680 DQSEDNEENS QPMDEEYDEQ VPNFSRGYSS GSRPHGMIDD ESEEEDEDAE GDDDGEEDDV 1740 DHAVDDVDAE MDDDDDIGDD GEDGGDGAEA NADEDNGASS YSSEYSD

Sequence ? help Back to Top

Protein Sequence Length: 1787 aa Download sequence Send to blast

MMKSPYQLEV LEKTYAVEQY PSETLRAELS AKIGLSDRQL QMWFCHRRLK DRKPPTKRQR  60
REEEAAAGPL MAPPPVLPPP TLPLASGELL ISGSSPYDEP PPMPPVHSRR GAGRSSAVPR  120
LSAPDIGRRY YEPLPVMLPP PVSSMQLTTS ELRVIHSVES QLGEPLREDG PVLGVEFDPL  180
PPGSFGAPIV PEQPKQPVRS YDTKIYSRHD SNLLKASAFF PSVEHPFVPN SIGGKRKLMV  240
GNPPVHPHAG SRAVHEYQFL PEQPSDRYEG SSRSRYYDTP VEASNSRMSS HTPGSQLLHG  300
SEEAALGYPF QGQISGSGLL PQSGRPEVLP AVPTDYEMIQ SNSNLNSVPV EGQYGISQVA  360
GFENSLLPSE RRAYHDEDGS RVDRKRKHNE EAKIAKEVEA HEKRIRKELE KQDMMKRKRE  420
EQMRKEMERH DRERRKEEER LLRERQREQE RFQREQRREH ERMEKFMQKQ SRRAEKQRQK  480
EELRKEKEAA RQKAANERAT ARRIAREYME LVEDERLELM ELAAQSKGLP SMLYLDSDTL  540
QQLDSFRGML SPFPPEVVRL KVPFSIKPWT VSEDNVGNLL MVWKFSITFA DFLGLSSVTL  600
DEFIQSLHDY DSRFLGELHI ALLKSIIKDI EDVSRTPSVA LGVNPGGGHP QIVEGAYAWG  660
FNIRSWQRHL NVLTWPEILR QLALSAGLGP QLKKRDAEDV YSRDDNEGHD GKIVISTLRN  720
GSAAVNAAAL MKERGYTNRR RSRHRLTPGT VKFAAFHVLS LEGSKGLTIL EVAERIQESG  780
LRDLTTSKTP EASISAALSR DTKLFERTAP STYCVKSPYR KDPADSEIVL SSAREKIRAF  840
HNVLSDSDAE KEADDAERDE DSECDDADDD PDGDDVNIDV GDGKDPLIGV KEQDGVPIMT  900
AVNSTQRVEE RVGTLTQPSA FTKSGKVDPN PSLDTSSDSP ARETSDYHEI APSDAEDQEI  960
DESNQGESWV QGLAEGDYCD LSVEERLNAL VALVGIANEG NSIRAVLEER LESANALKKQ  1020
MWAEAQHDKR RTKEEFASRV QYNSNMNLKA DVNQENGTES TTTPCRNVDK DNDGNAGVVN  1080
NNNEIIDHNS NAVNTSYERN GSGQDITATA DTLSVQQYAY ADKTRSQLRS YIGHRAEQLF  1140
VYRSLPLGQD RRRNRYWQCS TSASPNDPGS GRIFFESRDG YWRVLDSEEA FDSLVASLDT  1200
RGSREAQLHS MLQRIESTFK EAIKRKNGAV VEQSAGRYLK NGAMEMIRAS SRSEFGSPSS  1260
SLSGVTSDSA MAFSDSFKIE LGRNDVEKTA ISKRADGFIR WMWRECNDLK LTCAMKCGKK  1320
RCSELIHSCN YCYQIYLIEE RHCSSCHMIF KSIHNFSDHT SQCEEKRRTD HNWKMQTADH  1380
SVPVGMRLLK LQLSTIEASI PPEAIQPFWT DGYRKSWGVK LHSTASLEEI FQMLTLLEGA  1440
IKRDYLSSDF ETTNELLNIN TQDTASQNHV GLSGSGASLP WLPATTAAIA LRTLDLDSAV  1500
SYIQNQKMER DGGDFMKAPS RFAVVKNAQE LEPLEATGFD LYDGRLAAVS GRRGRGRGSR  1560
GGGSRGGRGR SRGGRVPRGI SSSSRIGFKD ENESSRKNAR RGRTTRGRRR GRRTVRPRQP  1620
SEGRGRSIPK ENLLGSFSML SNAKPATVEE SPRSSGADEW GLENRRPYIE GDENSSGSQL  1680
DQSEDNEENS QPMDEEYDEQ VPNFSRGYSS GSRPHGMIDD ESEEEDEDAE GDDDGEEDDV  1740
DHAVDDVDAE MDDDDDIGDD GEDGGDGAEA NADEDNGASS YSSEYSD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G35260.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107129	0.0	AK107129.1 Oryza sativa Japonica Group cDNA clone:002-124-C03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644503.2	0.0	PREDICTED: homeobox-DDT domain protein RLT2-like
TrEMBL	J3L2S0	0.0	J3L2S0_ORYBR; Uncharacterized protein
STRING	OB01G35260.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator