PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G35220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 189aa MW: 21087.5 Da PI: 6.4091 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 29.1 | 2.8e-09 | 108 | 172 | 1 | 58 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekew 58 lp+G++F+Ptd+el+ e+L+ k++ + + + +i+ +i++++P++Lp +++ ++++ OB01G35220.1 108 LPAGVKFDPTDQELL-EHLEGKARPDArklhplV---DefipTIEGEnGICYTHPERLPGTYTCYDRST 172 799************.99****998885665442...133333665557**********5433333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-10 | 100 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.396 | 108 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MTWCNSFNDV RAVENNLASA AAVAAAKKQQ QQLQASPHVN LIKTCPSCGH RAQYEQFSRT 60 HIYCALDTYI DQRRKHTYID GFASDGIEHG GQSQLQAAAA TIQDLPGLPA GVKFDPTDQE 120 LLEHLEGKAR PDARKLHPLV DEFIPTIEGE NGICYTHPER LPGTYTCYDR STHQYISVWV 180 SSADQKLFN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G35220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003223 | 2e-98 | AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06. | |||
GenBank | AP003706 | 2e-98 | AP003706.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1125_C04. | |||
GenBank | AP014957 | 2e-98 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 2e-98 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688316.1 | 4e-66 | PREDICTED: NAC domain-containing protein 73-like | ||||
TrEMBL | J3L2R6 | 1e-141 | J3L2R6_ORYBR; Uncharacterized protein | ||||
STRING | OB01G35220.1 | 1e-142 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP38737 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 2e-35 | NAC domain containing protein 73 |