PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G35210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 170aa MW: 19014.4 Da PI: 10.4288 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.1 | 2.4e-21 | 16 | 93 | 58 | 128 |
NAM 58 wyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +fF++ +k+y+tg+rk+r+++ + +W++tgk+++v++ +g+l g kk+Lv+y g+++k+ekt+Wvmh+y+l OB01G35210.1 16 RHFFHRPSKAYTTGTRKRRKVHtdeqggETRWHKTGKTRPVFT-GGKLRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 93 49*****************744456555778************.9*************6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.954 | 1 | 112 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-24 | 12 | 112 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-8 | 17 | 93 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MQNNSSDGVG KDGLIRHFFH RPSKAYTTGT RKRRKVHTDE QGGETRWHKT GKTRPVFTGG 60 KLRGYKKILV LYTNYGKQRK PEKTNWVMHQ YHLGSDEEEK DGELVVSKVF YQTQPRHSSI 120 LKEAAGIVDF YNPAAALIGY SQAAPNNRAA ASAHLMPNFE VHTGGAGFGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G35210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060307 | 1e-156 | AK060307.1 Oryza sativa Japonica Group cDNA clone:001-007-A11, full insert sequence. | |||
GenBank | AK102794 | 1e-156 | AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence. | |||
GenBank | AP003223 | 1e-156 | AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06. | |||
GenBank | AP003706 | 1e-156 | AP003706.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1125_C04. | |||
GenBank | AP014957 | 1e-156 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-156 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688316.1 | 1e-108 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 3e-65 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | J3L2R5 | 1e-124 | J3L2R5_ORYBR; Uncharacterized protein | ||||
STRING | OB01G35210.1 | 1e-125 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3075 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 4e-67 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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