PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G35000.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 461aa    MW: 47980.7 Da    PI: 8.3239
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G35000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.39.8e-1770130257
                   T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                   ++R+++ +eq+++Le+ F++   +p ++e+ ++ ++l    ++ +++V++WFqNr+ + k+
  OB01G35000.1  70 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIPRIRMQLqeygQVGDANVFYWFQNRKSRSKN 130
                   89*****************99*************************************995 PP
2Wus_type_Homeobox110.59.3e-3669131264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P+++ei ri+++L+eyG+++d+NVfyWFQNrk+R+++k
       OB01G35000.1  69 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQVGDANVFYWFQNRKSRSKNK 131
                        579**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.89666131IPR001356Homeobox domain
SuperFamilySSF466894.06E-1168131IPR009057Homeodomain-like
SMARTSM003893.7E-668135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-669132IPR009057Homeodomain-like
CDDcd000861.71E-669131No hitNo description
PfamPF000462.1E-1470129IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MASSNRHWPS MFRSKHAAQP WPPPWRAQAP DMGGSPPFLL SGSSSAGSGG YSLKSSPFSS  60
VGEERVPDPK PRWNPRPEQI RILEAIFNSG MVNPPRDEIP RIRMQLQEYG QVGDANVFYW  120
FQNRKSRSKN KLRGGSGRSA LGLGNSRASA PAPREAAAPF TPQPIPPQPV QQQQLVSPVA  180
AAPTSSSSSS SDRSSGSSKP VRPMSTQAMS ATAAMDLLSP LAVACHQQMF YQGQPVESAT  240
APPPVPASKG LCNELTGPNT TGHRSCAWTA GLGGQHWSGS ADQFGLGKNS EASIAAVSRE  300
DAHDHATKLG MLQYGYGITT PAVHVDVITS SDASVLPAVP SSPSPDAAVT VASVAATTSV  360
ADFAATAIST GAVANNQLQG LADFGGPGAG AGAAVVCVGI GGAAAPFFYP AAHFNVRHYF  420
GDEAELLRYK GDSRTEPVPV DASGVTVEPL LQGAVYLVLN F
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G35000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037601e-171AP003760.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05.
GenBankAP0149571e-171AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-171CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875666.11e-172WUSCHEL-related homeobox 7
SwissprotQ0JKK61e-173WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBLJ3L2P40.0J3L2P4_ORYBR; Uncharacterized protein
STRINGOB01G35000.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-41homeobox-3