PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G34720.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 91aa    MW: 10183.2 Da    PI: 8.9476
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G34720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.7e-102065345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+t E +l+ +a + +G g   +W++++r mg  +t+ +++ ++ 
     OB01G34720.1 20 TWSTRENKLFEEALAYYGEGtpdRWHKVSRAMGGSKTADEVRRHYE 65
                     7********************************99*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.1E-71770IPR001005SANT/Myb domain
PROSITE profilePS500906.5161968IPR017877Myb-like domain
SuperFamilySSF466891.12E-111975IPR009057Homeodomain-like
CDDcd001678.03E-62067No hitNo description
Gene3DG3DSA:1.10.10.603.4E-42067IPR009057Homeodomain-like
PfamPF002494.8E-82065IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSGSRSSSR NGSSANMAST WSTRENKLFE EALAYYGEGT PDRWHKVSRA MGGSKTADEV  60
RRHYEVLEHD VGLIESGRLP FPKYNTQGAW N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-231788177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G34720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0935931e-73FP093593.1 Phyllostachys edulis cDNA clone: bphylf056b16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458271.13e-44protein RADIALIS-like 3
SwissprotQ6NNN01e-24RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLJ3L2L67e-61J3L2L6_ORYBR; Uncharacterized protein
STRINGOB01G34720.11e-61(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-24RAD-like 6