PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G34710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 130aa MW: 13645.3 Da PI: 8.5813 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64.9 | 9e-21 | 12 | 46 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ OB01G34710.1 12 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 46 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.1E-21 | 6 | 63 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 14.404 | 6 | 42 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.28E-15 | 7 | 47 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.9E-18 | 7 | 46 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.13E-14 | 11 | 43 | No hit | No description |
Pfam | PF00320 | 1.9E-18 | 12 | 46 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 12 | 37 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MSGGAASAPR RCANCDTTST PLWRNGPRGP KSLCNACGIR YKKEERRAAA AAVAPTALAS 60 DSGVDYAYGY PRQQQQWGCY GPAVAKAASF GAFGDAVSED GPCLPWGLGV MPSSPAFSAV 120 REVPSLFQYY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G34710.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003284 | 1e-116 | AP003284.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671D01. | |||
GenBank | AP014957 | 1e-116 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-116 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646176.2 | 4e-90 | PREDICTED: GATA transcription factor 20-like | ||||
TrEMBL | J3L2L5 | 5e-89 | J3L2L5_ORYBR; Uncharacterized protein | ||||
STRING | OB01G34710.1 | 9e-90 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 4e-24 | GATA transcription factor 20 |