PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G34490.1
Common NameLOC102707925
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 378aa    MW: 40885 Da    PI: 10.1108
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G34490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_162.67.7e-20232294163
                   XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                   +ke+krerrkq+NRe+ArrsR+RK+ae++eL++kv+ L+ eN++L+ e+++l + ++kl+ e+
  OB01G34490.1 232 DKESKRERRKQSNRESARRSRLRKQAETDELARKVELLTVENRSLRREISRLAESSKKLRLEN 294
                   689********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.1E-25192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1707.4E-16229291No hitNo description
SMARTSM003387.1E-19232296IPR004827Basic-leucine zipper domain
PfamPF001705.5E-18233294IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.219234297IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.31E-10236290No hitNo description
CDDcd147021.97E-20237285No hitNo description
PROSITE patternPS000360239254IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGNDEAVVTQ KMGKAPSPPK DHPALGPYLD WSNMQAYYGP GILPPTFVGP GIVPGHTTPF  60
IWGPQPLVPS AFGKPYATIY PPGGGFSHPF MPLMVNPLSM EPAKSVNSKE NCSNKKLKEI  120
DGAAISTGSG NSEKTSGDYS LEGSSDGNNQ KASGTPKKRS IDDRPKSDDK KAIHVSPGVE  180
TGGALTPNDR PSERAALPNL CIPVTAIKPD VSAASDFRVI ATPVTEVPTK DDKESKRERR  240
KQSNRESARR SRLRKQAETD ELARKVELLT VENRSLRREI SRLAESSKKL RLENSALMEK  300
LTETGPDEAQ EVPPVKNKKA RSARGVENFL SMKDNTNTSR SSGHMEQATP KGYSISRQTS  360
AQELTKGTRL ATDAVAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248254RRSRLRK
2248255RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G34490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6069410.0AY606941.1 Oryza sativa (indica cultivar-group) salt-stress inducible bZIP protein mRNA, complete cds.
GenBankCT8338380.0CT833838.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646165.10.0PREDICTED: G-box-binding factor 3-like
TrEMBLJ3L2J30.0J3L2J3_ORYBR; Uncharacterized protein
STRINGOB01G34490.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.18e-43G-box binding factor 3