PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G32850.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 361aa    MW: 38435.4 Da    PI: 7.1103
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G32850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30200257259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dgy+WrK GqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+
  OB01G32850.1 200 EDGYRWRKSGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 257
                   8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-31190259IPR003657WRKY domain
SuperFamilySSF1182902.48E-27192259IPR003657WRKY domain
PROSITE profilePS5081129.918194259IPR003657WRKY domain
SMARTSM007743.2E-34199258IPR003657WRKY domain
PfamPF031064.9E-24200257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSSGGGGDRH APYQQHGHGH LARGDRGADD YVYNSSDMES FFFSQLPSGV GGGGATGVGG  60
ADEIMPYSSI TDYLQGFLDP SGLARHLDVP GPSSQDTPVK QELSVDVTSH DSQGTGGVAG  120
EGVAQATPNS SASFSSSDGE AEGGKSRRCK KGHAKAEDEK DEEDGENSKK PNKPKKKAEK  180
RQRQPRGALF LTKSEVDHLE DGYRWRKSGQ KAVKNSPYPR SYYRCTTPKC GVKKRVERSY  240
QDPSTVITTY EGQHTHHSPA SLRGGGAGGH HLFMPGGLHG LPPPSHLMPA GFHPELMGLM  300
HHYPMAAAAA NPSMYLPGVA APPPAAADAM STAPPLQQHH FTDYALLQDL FPSTMPSNAH  360
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-281922601078Probable WRKY transcription factor 4
2lex_A4e-281922601078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G32850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087450.0AK108745.1 Oryza sativa Japonica Group cDNA clone:002-150-E09, full insert sequence.
GenBankAY3418560.0AY341856.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
GenBankHQ8588570.0HQ858857.1 Oryza sativa Japonica Group isolate UT1620 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455987.11e-148probable WRKY transcription factor 71
RefseqXP_015626307.11e-148WRKY transcription factor 71
TrEMBLJ3L2290.0J3L229_ORYBR; Uncharacterized protein
STRINGOB01G32850.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.15e-41WRKY DNA-binding protein 71