PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G32480.1 | ||||||||
Common Name | LOC102713132 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 78aa MW: 8858.82 Da PI: 7.3664 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.2 | 2.9e-11 | 32 | 71 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++T+eE++l + +++ G++ W++Ia +++ gRt+k++ +w OB01G32480.1 32 PFTEEEEDLVFRIHRLVGNR-WELIAGRIP-GRTAKEVEMFW 71 79******************.*********.******98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.696 | 25 | 78 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-8 | 29 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.55E-10 | 32 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-10 | 32 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.32E-9 | 32 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-14 | 32 | 72 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MDSNRGSQGK NSKTSDGCET KGVNSTAQNF APFTEEEEDL VFRIHRLVGN RWELIAGRIP 60 GRTAKEVEMF WARKQQDT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269|PubMed:22168948}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G32480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT833447 | 2e-78 | CT833447.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA029N02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644378.1 | 9e-53 | PREDICTED: MYB-like transcription factor ETC3 | ||||
Swissprot | B3H4X8 | 3e-18 | TCL2_ARATH; MYB-like transcription factor TCL2 | ||||
TrEMBL | J3L1Z2 | 2e-51 | J3L1Z2_ORYBR; Uncharacterized protein | ||||
STRING | OB01G32480.1 | 3e-52 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5275 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01060.1 | 1e-20 | CAPRICE-like MYB3 |
Link Out ? help Back to Top | |
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Entrez Gene | 102713132 |
Publications ? help Back to Top | |||
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