PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G31400.1
Common NameLOC102702506
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 315aa    MW: 32410 Da    PI: 7.8828
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G31400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.2e-12142186347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ +  +lG+g+W+ I+r   ++Rt+ q+ s+ qk+
     OB01G31400.1 142 PWSEEEHRLFLVGLDKLGKGDWRGISRSYVTTRTPTQVASHAQKF 186
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.374135191IPR017930Myb domain
SuperFamilySSF466891.09E-16136192IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-16138190IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.3E-9139182IPR009057Homeodomain-like
SMARTSM007176.0E-9139189IPR001005SANT/Myb domain
PfamPF002495.9E-10142185IPR001005SANT/Myb domain
CDDcd001671.73E-8142187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MARKCSHCGN YGHNSRTCSA GAAGQRGDAM LCDGGVVGGG GGVGGGGGSG LRLFGVQVHV  60
AAGGGGGDGG GGGGGGSLSM KKSYSVDCLQ LAAAQGSLVS PSSSSSSSML LSIDEGLERA  120
SNGYLSDGPH GRIVQERKKG VPWSEEEHRL FLVGLDKLGK GDWRGISRSY VTTRTPTQVA  180
SHAQKFFLRQ SSIGKKKRRS SLFDMVPICE NGARVSEQLS SEGASSASLS LMNAPRHELS  240
DRAAAIDLNS TEEDDTVVVS SASGASSARP LFPVVLMEPQ QQQQASHHGH GHHHHCTPLD  300
LELGMSLSST PSIGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194198KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G31400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615000.0AK061500.1 Oryza sativa Japonica Group cDNA clone:006-309-D10, full insert sequence.
GenBankAK1034320.0AK103432.1 Oryza sativa Japonica Group cDNA clone:J033128P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644342.10.0PREDICTED: putative uncharacterized protein DDB_G0277255
TrEMBLJ3L1N40.0J3L1N4_ORYBR; Uncharacterized protein
STRINGOB01G31400.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.18e-45MYB_related family protein