PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G30760.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 336aa    MW: 36058 Da    PI: 9.4901
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G30760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-134192147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     ++rWT+eE+  l+ +v+++G+g W+tI r          R+  ++k++w+++
     OB01G30760.1 41 KQRWTPEEEAALKAGVAKHGTGKWRTILRDPEftallRLRSNVDLKDKWRNL 92
                     79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.5553697IPR017930Myb domain
SuperFamilySSF466892.15E-153894IPR009057Homeodomain-like
SMARTSM007171.0E-74095IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-144192IPR009057Homeodomain-like
PfamPF002492.2E-94192IPR001005SANT/Myb domain
CDDcd116605.19E-194292No hitNo description
SMARTSM005263.3E-13158224IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.2E-17159232IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.5E-16160237IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150425.061161229IPR005818Linker histone H1/H5, domain H15
PfamPF005381.2E-10166222IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MKLPKENPGI NFERNPKNAK RRAGAGAGVG GGERALMGAP KQRWTPEEEA ALKAGVAKHG  60
TGKWRTILRD PEFTALLRLR SNVDLKDKWR NLSVTAGGYG SRERARMALK GGKRGPKAIA  120
GPMDVDEKIP DNDDNAVIDA KPLAVVVETM QLESSSEPEK SVARLDDLIL EAIENLKEPS  180
GSTKTAISAY IEEQYWPPDG FQKFLSAKLK AMVATGKLIK VNQKYRIAPS SNSSGGKNMK  240
LFSTGEMNIE NSNVGQLSQP QVDAELDKMK NMSKEEAAAF AARAVAEAET AIAEAEAAAR  300
AAEAAEAEAD AAKAFLDAVA LTMQNRNHAS AVLRAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11521PKNAKRR
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G30760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1030400.0AK103040.1 Oryza sativa Japonica Group cDNA clone:J033117F01, full insert sequence.
GenBankCT8308630.0CT830863.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110E03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644322.10.0PREDICTED: single myb histone 2-like isoform X1
SwissprotB4FT401e-120SMH2_MAIZE; Single myb histone 2
TrEMBLJ3L1H00.0J3L1H0_ORYBR; Uncharacterized protein
STRINGOB01G30760.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.35e-64telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]