PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G29940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 504aa    MW: 55618.8 Da    PI: 8.6864
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G29940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-0684106123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++Cgk F r  nL+ H r H
  OB01G29940.1  84 FVCEICGKGFQRDQNLQLHRRGH 106
                   89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-783106No hitNo description
SMARTSM003550.01284106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.61484106IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-584106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM00355130126156IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.19E-7156181No hitNo description
SMARTSM00355160161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MFHHHLQQQQ QFLLDEADAD AASADQQESS MSNLTSSASA AAPPPSSGGG GNNNKRKRSL  60
PGNPDPEAEV VALSPATLMA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRGSKEA  120
VRKKVYICPE ASCVHHDPSR ALGDLTGIKK HFFRKHGEKK WKCDKCSKKY AVHSDWKAHS  180
KVCGTREYKC DCGTIFSRRD SFITHRAFCD ALTEESAKAI GGGLPPPPAP PAGXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXGN GLVPAGVMGQ LARTASHGRS GEDVGGGGGG  420
GGTGTGAGGG SDGMTRDFLG LRAFSHRDIL LAGFDSSCMG HVNAATNAGM ACYEPPQHGQ  480
PQNQHQQQHQ SSSNEPWHGM GSHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33157218364Zinc finger protein JACKDAW
5b3h_F2e-33157218364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110123KLKQRGSKEAVRKK
2409422SGEDVGGGGGGGGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G29940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2892090.0AK289209.1 Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A077RXA91e-127A0A077RXA9_WHEAT; Uncharacterized protein
STRINGORUFI01G22710.11e-126(Oryza rufipogon)
STRINGOS01T0572300-011e-126(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.16e-93indeterminate(ID)-domain 7