PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G29940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 504aa MW: 55618.8 Da PI: 8.6864 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.7e-06 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H OB01G29940.1 84 FVCEICGKGFQRDQNLQLHRRGH 106 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.19E-7 | 83 | 106 | No hit | No description |
SMART | SM00355 | 0.012 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.614 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 84 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 126 | 156 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.19E-7 | 156 | 181 | No hit | No description |
SMART | SM00355 | 160 | 161 | 181 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MFHHHLQQQQ QFLLDEADAD AASADQQESS MSNLTSSASA AAPPPSSGGG GNNNKRKRSL 60 PGNPDPEAEV VALSPATLMA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRGSKEA 120 VRKKVYICPE ASCVHHDPSR ALGDLTGIKK HFFRKHGEKK WKCDKCSKKY AVHSDWKAHS 180 KVCGTREYKC DCGTIFSRRD SFITHRAFCD ALTEESAKAI GGGLPPPPAP PAGXXXXXXX 240 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 300 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 360 XXXXXXXXXX XXXXXXXXXX XXXXXXXXGN GLVPAGVMGQ LARTASHGRS GEDVGGGGGG 420 GGTGTGAGGG SDGMTRDFLG LRAFSHRDIL LAGFDSSCMG HVNAATNAGM ACYEPPQHGQ 480 PQNQHQQQHQ SSSNEPWHGM GSHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-33 | 157 | 218 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-33 | 157 | 218 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 123 | KLKQRGSKEAVRKK |
2 | 409 | 422 | SGEDVGGGGGGGGT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G29940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK289209 | 0.0 | AK289209.1 Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A077RXA9 | 1e-127 | A0A077RXA9_WHEAT; Uncharacterized protein | ||||
STRING | ORUFI01G22710.1 | 1e-126 | (Oryza rufipogon) | ||||
STRING | OS01T0572300-01 | 1e-126 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 6e-93 | indeterminate(ID)-domain 7 |