PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G29910.1 | ||||||||
Common Name | LOC102714232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 321aa MW: 35883.6 Da PI: 5.683 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 100.2 | 1.9e-31 | 12 | 108 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEES....SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws....engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 F+ k+ye++ d+ ++ ++sws +g+sfvv+d++ +a vLp++Fkh nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll OB01G29910.1 12 FVAKTYEMVADAGTDAVVSWSwgpdGKGSSFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVNPDR---------WEFANEAFLAGQKHLL 99 9*******************976323469****************************************999.........**************** PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 ++ikr++ + OB01G29910.1 100 RNIKRRRVS 108 *****9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.2E-34 | 8 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.98E-30 | 8 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.0E-51 | 8 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.8E-27 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-9 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 55 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-9 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MEGLGEAGPA PFVAKTYEMV ADAGTDAVVS WSWGPDGKGS SFVVWDPHAL AAGVLPRFFK 60 HANFSSFVRQ LNTYGFRKVN PDRWEFANEA FLAGQKHLLR NIKRRRVSKP LVDSHLRNKT 120 SVVFGQPEAL GEVGSLKRDR AALRAEVIML KQQYNNCKSQ LIAMEEMVQN IERRQQQTIN 180 FFARVLTNPV FVQQVLLNYV KKNGLRGSAK RQRLMENEEH HADLPLNKGT EAASAMSADV 240 SAGSTGCGTV GNDEVTPKFS VQNIDNMCDD VWEELDALPE TGMEQEDKAG ICFDVEEFVG 300 RPCGWVDDCP YLVEPMQFVE H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-21 | 3 | 105 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-21 | 3 | 105 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-21 | 3 | 105 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 106 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G29910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064271 | 0.0 | AK064271.1 Oryza sativa Japonica Group cDNA clone:002-105-E08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644301.1 | 0.0 | PREDICTED: heat stress transcription factor A-6a | ||||
Swissprot | Q657C0 | 0.0 | HFA6B_ORYSJ; Heat stress transcription factor A-6a | ||||
TrEMBL | J3L185 | 0.0 | J3L185_ORYBR; Uncharacterized protein | ||||
STRING | OB01G29910.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 5e-74 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Entrez Gene | 102714232 |
Publications ? help Back to Top | |||
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