PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G29910.1
Common NameLOC102714232
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 321aa    MW: 35883.6 Da    PI: 5.683
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G29910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.21.9e-31121082103
                   HHHHHHHHHCTGGGTTTSEES....SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws....engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                   F+ k+ye++ d+ ++ ++sws     +g+sfvv+d++ +a  vLp++Fkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  OB01G29910.1  12 FVAKTYEMVADAGTDAVVSWSwgpdGKGSSFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVNPDR---------WEFANEAFLAGQKHLL 99 
                   9*******************976323469****************************************999.........**************** PP

                   XXXXXXXXX CS
  HSF_DNA-bind  95 ekikrkkse 103
                   ++ikr++ +
  OB01G29910.1 100 RNIKRRRVS 108
                   *****9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.2E-348105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.98E-308105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-518105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-2712105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-91235IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-96779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEGLGEAGPA PFVAKTYEMV ADAGTDAVVS WSWGPDGKGS SFVVWDPHAL AAGVLPRFFK  60
HANFSSFVRQ LNTYGFRKVN PDRWEFANEA FLAGQKHLLR NIKRRRVSKP LVDSHLRNKT  120
SVVFGQPEAL GEVGSLKRDR AALRAEVIML KQQYNNCKSQ LIAMEEMVQN IERRQQQTIN  180
FFARVLTNPV FVQQVLLNYV KKNGLRGSAK RQRLMENEEH HADLPLNKGT EAASAMSADV  240
SAGSTGCGTV GNDEVTPKFS VQNIDNMCDD VWEELDALPE TGMEQEDKAG ICFDVEEFVG  300
RPCGWVDDCP YLVEPMQFVE H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-21310517129Heat shock factor protein 1
5d5v_B1e-21310517129Heat shock factor protein 1
5d5v_D1e-21310517129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102106KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G29910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642710.0AK064271.1 Oryza sativa Japonica Group cDNA clone:002-105-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644301.10.0PREDICTED: heat stress transcription factor A-6a
SwissprotQ657C00.0HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLJ3L1850.0J3L185_ORYBR; Uncharacterized protein
STRINGOB01G29910.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-74heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]