PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G25460.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 383aa    MW: 42918.2 Da    PI: 4.333
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G25460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1318.5e-10307359150
          FAR1   1 kfYneYAkevGFsvrkskskkskrng...eitkrtfvCskegkreeekkktek 50 
                   +fY++YA  vGFs++k++s+ s+++g   ++t++tf+C++  k e++k+++++
  OB01G25460.1 307 SFYQNYALIVGFSTVKATSYISRKKGvesKVTRQTFKCQRRKKMESSKEEENE 359
                   5******************999665422279***********99999888333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.3E-8307360IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAPTIITEQK LFKLSEGGAI MGHNARGYDE GLCFGSNKAG AWDYETQAAP DDQTERYEAF  60
LNLSQESNMM YTDLIQQIGF LKEPNTTSQS GYQADAPVGG FMNLLQLTED FENNTDYSLE  120
NYLNDDANLH DKHDASIGVG CNSNSEHNMY MTTSRFELDE KFEGFMQSTE SLYDSELHHV  180
SVVLLDAVNR ENIFDEEPAD IDNALGETEL INKGIQLDSV HDVEQNADKV VQQSPDDTAV  240
TFDDNCTLSI ANSEDMAGQK QNLTEEDIQL FLHDESISAA VRSSQEGDSM HVPKKGKKFR  300
TDKEAISFYQ NYALIVGFST VKATSYISRK KGVESKVTRQ TFKCQRRKKM ESSKEEENEQ  360
ATLGDFLNAD KNVVGEAVVK KRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328348RKKGVESKVTRQTFKCQRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G25460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694330.10.0PREDICTED: uncharacterized protein LOC107304505 isoform X2
TrEMBLJ3KZZ00.0J3KZZ0_ORYBR; Uncharacterized protein
STRINGOB01G25460.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2200135