PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G23960.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 470aa    MW: 49664.8 Da    PI: 10.1389
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G23960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF252.5e-0824501541
                  HHHHHHHHHHHHHHHHHT-EEEEEEE- CS
        SRF-TF 15 kRrngilKKAeELSvLCdaevaviifs 41
                   R+n + KKAeELS+LC++ v ++  +
  OB01G23960.1 24 GRKNSLKKKAEELSTLCGVPVGLVCGG 50
                  59*******************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.49E-9683IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.8861247IPR002100Transcription factor, MADS-box
PfamPF003191.6E-81351IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MARIRRTPKS FVADRKKRAE MHKGRKNSLK KKAEELSTLC GVPVGLVCGG PGSGGEGTSG  60
TASAVVWESE PGVLDKYRAL PPEVRAKHTR QMYLEAELAK ERAKLASITA EYRQTMLLAM  120
AAQLEAASKR TGRLFDQRHD GNGVNDDGSL DLQHIPGGAS VADVPLGHGV QYTGSSSRSS  180
NQMVETTAPA GVGVINDADQ YGGLLPSFEH DTLQPHVTQP GHGFPGGDNV YVDMVHMEYP  240
WQAPPGNPNV YNGWPDLGLG SGNAGNAGAT TSGAEQARYP PILDNSHGSF LAASAQPQPL  300
AFSSGAYFIN APNDYFSMGV GDSLIDVSDY SVECRSSLPT ATTTNRRITL SVARAAPRPA  360
TAATSSNRRV TLSVARAAPR PATAATSSIR RITFSVARVA PNQAAATTSI RRITLSVARP  420
HGRRRARRLA LPELGELIAT SPVILLHRRS ISKSKSGAGH CESGNLGSTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421428GRRRARRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G23960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3KZJ00.0J3KZJ0_ORYBR; Uncharacterized protein
STRINGOB01G23960.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150691120