PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G22470.1
Common NameLOC102701946
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 300aa    MW: 32886.1 Da    PI: 5.7194
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G22470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-092342672255
                   SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
      Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    +yp++e++ +LA+++gL+ +q+ +WF N+R ++
  OB01G22470.1 234 WPYPTEEDKLRLAARTGLDPKQINNWFINQRKRH 267
                   59*****************************885 PP
2ELK33.21.2e-11187208122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   ELK++Ll+KYsg+L+ L++EF+
  OB01G22470.1 187 ELKEMLLKKYSGCLSRLRSEFL 208
                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.5E-214286IPR005540KNOX1
PfamPF037901.8E-204484IPR005540KNOX1
SMARTSM012563.0E-2790141IPR005541KNOX2
PfamPF037911.7E-2494140IPR005541KNOX2
SMARTSM011883.6E-6187208IPR005539ELK domain
PfamPF037891.4E-8187208IPR005539ELK domain
PROSITE profilePS5121310.423187207IPR005539ELK domain
PROSITE profilePS5007112.843207270IPR001356Homeobox domain
SMARTSM003896.6E-14209274IPR001356Homeobox domain
SuperFamilySSF466892.74E-19209276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-27212271IPR009057Homeodomain-like
CDDcd000861.21E-13219271No hitNo description
PfamPF059206.3E-17227266IPR008422Homeobox KN domain
PROSITE patternPS000270245268IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEDLYSIHPG ISRVGGAASE ASGSGVVVVG GSSSSAPLDL TELMKAQIAG HPRYPTLLSA  60
YIECRKVGAP PEVASLLEEI SRERRAGAGC AGEIGVDPEL DEFMEAYCRV LVRYKEELSR  120
PFDEAASFLS SIQTQLSNLC SGGGSSPAAT ATHSDEMMGS SDEDQCSGET DMLDIGQEQN  180
SRLADHELKE MLLKKYSGCL SRLRSEFLKK RKKGKLPKDA RSALLEWWNT HYRWPYPTEE  240
DKLRLAARTG LDPKQINNWF INQRKRHWKP SEGMRFALME GVAGGSSGTT LYFDTGTIGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202211LRSEFLKKRK
2208212KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G22470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288830.0AB028883.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH6, complete cds.
GenBankAK2413120.0AK241312.1 Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644109.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP290.0KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLJ3KZ410.0J3KZ41_ORYBR; Uncharacterized protein
STRINGOB01G22470.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.18e-85KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]