PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G22030.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 314aa    MW: 34086.3 Da    PI: 6.7289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G22030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-08143185754
                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   + E++RR+r+ ++++ L  l+P++     +K + a++   A+eYI++L
  OB01G22030.1 143 KKEKQRRQRLTEKYNALMLLIPNR-----TKEDRATVISDAIEYIQEL 185
                   57*********************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.855136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-5142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-6143185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-8145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.69E-7145185No hitNo description
SuperFamilySSF474593.14E-10145205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MPGELNFHLL HSLEAAVAAA AASSTGATSQ PTVDYFFGGS AEQQATVVQY DQLVAPPHHQ  60
TVTMLRDYYG GHYPPAGAAT EAYLRGPRTG SSSLVFGPAD DESAYMVGPF DSSPTPRSGA  120
GGRKRSRANA GFRGGGPANG VEKKEKQRRQ RLTEKYNALM LLIPNRTKED RATVISDAIE  180
YIQELGRTVE ELTLLVEKKR RRGELQGDVV DVAPSAVLLE AAESSEGERR SKETFVDVRI  240
VEDDVNIKLT KRRRDGCLAA ASRALDDLRL DLVHLSGGKI GDCHIYMFNT KIHPGSPVFA  300
SAVASRLIEV VDEY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127GRKRSRA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G22030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068501e-180AK106850.1 Oryza sativa Japonica Group cDNA clone:002-118-A11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694937.10.0PREDICTED: transcription factor TIP2-like
RefseqXP_015694940.10.0PREDICTED: transcription factor TIP2-like
RefseqXP_015694941.10.0PREDICTED: transcription factor TIP2-like
SwissprotQ5JNS01e-180TIP2_ORYSJ; Transcription factor TIP2
TrEMBLJ3KYZ70.0J3KYZ7_ORYBR; Uncharacterized protein
STRINGOB01G22030.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.25e-31bHLH family protein