PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G21830.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 606aa    MW: 64652.2 Da    PI: 7.2085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G21830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.6e-16357403455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  OB01G21830.1 357 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 403
                   5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-20350411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-17350407No hitNo description
SuperFamilySSF474591.31E-20351413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-13357403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MHVCLCACRS DGNDFAELLW ENGQAVVQGR RKHPQPAFPP FGFGIGGGSS SRAQERQLGG  60
GDAFAKVGAG FGALAMAPAV HDFAPSFGAA HDNNGDDDTV PWIHYPIIDD DDGAAAPAAL  120
AAADYGSXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXRHRGAASK LPRPGGGEGV MNFSLFSRPA VLARATLQSA QRPQGTDKAS NGTASNRVES  240
TVVQTASGPR SAPAFAPAPP MAPAINLQHE TGRDRAGRTM PIHKHEARKV PEAATVATSS  300
VCSANGAGSD DLWRPPKRKS QAQTECSASQ DEDLDDEPGV VRRSAARSTK RSRTAEVHNL  360
SERRRRDRIN EKMRALQELI PNCNKIDKAS MLDEAIEYLK TLQLQVQMMS MGTGMCIPPM  420
LLPTAMQHLQ IPPMAHFPHL GIGLGYGMGV FDMNTGALPM PPMPGAHFPC PMIPGASPQG  480
LGIPGTSTMP MFGVPGQAIP SPASSVPPFA SLAGLPVRPS GVPPQVSGAM ANMVQDQQQG  540
IENQQQQCLN KEAIQGANPG DPQMQIIMQG DNEHFKIPSS AQTKSSQFSD GTGKGTNARE  600
RDGAET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361366ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G21830.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022520.0AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688295.10.0PREDICTED: transcription factor APG-like
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLJ3KYX70.0J3KYX7_ORYBR; Uncharacterized protein
STRINGOB01G21830.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-33phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]