PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G21720.1
Common NameLOC102716452
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 427aa    MW: 47576.1 Da    PI: 6.5692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G21720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l + ++++G g+W+t+++  g+ R++k+c++rw +yl
     OB01G21720.1 14 KGLWSPEEDEKLMNHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding48.12.7e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE++l+v++++ lG++ W+ Ia +++ gRt++++k+ w++
     OB01G21720.1  67 RGAFSQEEEDLIVELHAVLGNR-WSQIATRLP-GRTDNEIKNLWNS 110
                      89********************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.396961IPR017930Myb domain
SuperFamilySSF466892.85E-2912108IPR009057Homeodomain-like
SMARTSM007176.5E-121363IPR001005SANT/Myb domain
PfamPF002495.5E-151461IPR001005SANT/Myb domain
CDDcd001679.94E-111761No hitNo description
PROSITE profilePS5129425.60162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2565116IPR009057Homeodomain-like
SMARTSM007176.5E-1366114IPR001005SANT/Myb domain
PfamPF002498.8E-1467110IPR001005SANT/Myb domain
CDDcd001671.54E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSTV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQEEEDLIVE LHAVLGNRWS QIATRLPGRT DNEIKNLWNS CIKKKLRQKG  120
IDPNTHKPLA EVDRSKATPT ISTDRTSESS DVDLSSGVTL HNLSHLLSET AQSSELLPVK  180
VTKPRTAPGL TRLKVPPKEL FLDQLTSGHE NLPSCRSSGP IPNFPFQQLL CYNNDFSSMN  240
GGSRDSLWYN QNESSSSTIS TVMPPVSPST LSTSTGLNPS PDNAHSGGTG IHNAQFYWDN  300
NNPSSSSSTG SSGNNGLGFE LQSTSSLLET NIFPWSDLAQ EKDSQAQLEE ELKWPDLLHG  360
TFSEMPAPMQ NLSQSLYEDV VKAESQFNME GFCAAWSQNL QPQQHLPVVS DMYDKDLQRM  420
SLSFENI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G21720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118030.0AK111803.1 Oryza sativa Japonica Group cDNA clone:J013087D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644076.10.0PREDICTED: transcription factor MYB86
TrEMBLJ3KYW60.0J3KYW6_ORYBR; Uncharacterized protein
STRINGOB01G21720.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.14e-89myb domain protein 61