PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G21470.1 | ||||||||
Common Name | LOC102713217 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 330aa MW: 36943.5 Da PI: 7.798 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.9 | 2.9e-10 | 44 | 86 | 3 | 45 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L OB01G21470.1 44 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 86 56889*************************9877777766555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-8 | 36 | 89 | No hit | No description |
SMART | SM00338 | 9.8E-8 | 42 | 105 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.438 | 44 | 88 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.0E-7 | 45 | 86 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.78E-7 | 46 | 89 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 49 | 64 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.6E-35 | 128 | 203 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MADMSPRTDT STDDTDDNHM LEPGQAALVA ASDSSDRSKD KHEDQKTLRR LAQNREAARK 60 SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGIFISSSV DQTHSMSGNG ALAFDMEYAR 120 WLEEHNRQIN ELRSAVNAHA SDNELRAVVD KIMSHYEEIF KQKGSAAKAD VFHVLSGMWK 180 TPAERCFLWL GGFRPSELLK LLSTQLEPLT EQQLSGISNL QQSSQQAEDA LSQGMEALQQ 240 SLAETLAGSL GSSGSTGNVA NYMGQMAMAM GKLGTLENFL RQADNLRQQT LQQMQRILTT 300 RQSARALLVI SDYSSRLRAL SSLWLARPKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G21470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB051296 | 0.0 | AB051296.1 Oryza sativa OsNIF3 mRNA for bZIP transcription factor, complete cds. | |||
GenBank | AK242743 | 0.0 | AK242743.1 Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence. | |||
GenBank | HM991168 | 0.0 | HM991168.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 3 mRNA, complete cds. | |||
GenBank | KM096571 | 0.0 | KM096571.1 Oryza sativa Indica Group histone-binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644064.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38) isoform X1 | ||||
Refseq | XP_015688196.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38) isoform X1 | ||||
Swissprot | Q0JNL3 | 0.0 | TGA23_ORYSJ; Transcription factor TGA2.3 | ||||
TrEMBL | J3KYU1 | 0.0 | J3KYU1_ORYBR; Uncharacterized protein | ||||
STRING | OB01G21470.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-142 | bZIP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102713217 |
Publications ? help Back to Top | |||
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