PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G21320.1

Common Name

LOC102711743

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 493aa MW: 53634.5 Da PI: 6.6559

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G21320.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122	2.1e-38	116	176	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGa+rnvPvG+grr+nk++s OB01G21320.1 116 PDKILLCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHAS 176 789999****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	113	173	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-31	118	174	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.22	120	174	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	122	158	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MAAPRQGREQ ERDDPAIKLF GRTIPLHLQP SAAAAAEEEE EVMTKLADDV KNNDDIPLVP 60 DKPLIVEDIP FCSNGSKKND LHAIGRQDGR METNSRTEDV KTEPDGSVPE KILKKPDKIL 120 LCPRCNSMET KFCYFNNYNV HQPRHFCRNC QRYWTAGGAM RNVPVGAGRR RNKHASHYRQ 180 TMMPCSNIIA TGDVSDVVHH QAITLESSVP QGTLKENEAT TKFGSEVSVC KSSASILDTR 240 EPNNNDLVPL TSGDNKEEKS CASSVAVSEN LMPDNVITKE PNNRSGCCNG VALPYPAGPS 300 LVLPWSLGWN SVAVMAATHQ STQPVLGLED RIPCPASWPL LPIAPAPGIC APVVPIPLVP 360 PLWSCFPGWP NGIWNSQCPG SNSTTVSSTP PNKISCSANN SLALGKHSRE ESLQEEEKTR 420 NNLWVPKTLR IDDPAEAAKS SIWATLGIKP DDKGIFKSFQ SNVPKNGTAP ESPQALQANP 480 AALSRSQSFQ ETT

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MAAPRQGREQ ERDDPAIKLF GRTIPLHLQP SAAAAAEEEE EVMTKLADDV KNNDDIPLVP  60
DKPLIVEDIP FCSNGSKKND LHAIGRQDGR METNSRTEDV KTEPDGSVPE KILKKPDKIL  120
LCPRCNSMET KFCYFNNYNV HQPRHFCRNC QRYWTAGGAM RNVPVGAGRR RNKHASHYRQ  180
TMMPCSNIIA TGDVSDVVHH QAITLESSVP QGTLKENEAT TKFGSEVSVC KSSASILDTR  240
EPNNNDLVPL TSGDNKEEKS CASSVAVSEN LMPDNVITKE PNNRSGCCNG VALPYPAGPS  300
LVLPWSLGWN SVAVMAATHQ STQPVLGLED RIPCPASWPL LPIAPAPGIC APVVPIPLVP  360
PLWSCFPGWP NGIWNSQCPG SNSTTVSSTP PNKISCSANN SLALGKHSRE ESLQEEEKTR  420
NNLWVPKTLR IDDPAEAAKS SIWATLGIKP DDKGIFKSFQ SNVPKNGTAP ESPQALQANP  480
AALSRSQSFQ ETT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G21320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644059.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	J3KYS6	0.0	J3KYS6_ORYBR; Uncharacterized protein
STRING	OB01G21320.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-66	cycling DOF factor 2

Link Out ? help Back to Top
Entrez Gene	102711743