PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G20470.1

Common Name

LOC102701585

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 528aa MW: 57821.3 Da PI: 4.6855

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G20470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.1e-40	146	205	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s OB01G20470.1 146 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSS 205 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	143	203	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	148	204	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	150	204	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	152	188	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MCDKDPGIRL FGRVIPLAEA AAAAEAERAQ DEDQHREIEE TNDNEMKVDV PQEKEDDEMK 60 VDAPEEKKDN EVTADAPQEE KDDEMGVDAS QSTDSVEPVS TSTLDNSKED QGQMNNVEGK 120 AASDSKEENE KTANDESGQD KVLKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC 180 QRYWTAGGTM RNVPVGAGRR KSKSSSLHYR HLLMAPDCMM GSRVDISRSV NPEAFGSSHS 240 TPIQPIGRNE AVLKFGPEVP LCESMASVLS IKEQNVTNTG AVPASENQED NSCASSITSY 300 NMLPENAVPV DKNGAPVYCN GVNSPMPQYY LGAPYMYPWG IGWNNLPMMV PAKGMSESAS 360 PSESCSTIPA PWMNSPLMPP SRLPAPAFPY PLVPPALWGC LSSWPATTWN IPWIRTNDCM 420 SPSSSSNSSC SGNGSPLGKH SRDSHPLREE KEEKSLWIPK TLRIDDPDDA AKSSIWATLG 480 IKPGDPGIFK PFQSKGESKV QTSDSRPARA LQANPAAMSR SQSFQETS

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MCDKDPGIRL FGRVIPLAEA AAAAEAERAQ DEDQHREIEE TNDNEMKVDV PQEKEDDEMK  60
VDAPEEKKDN EVTADAPQEE KDDEMGVDAS QSTDSVEPVS TSTLDNSKED QGQMNNVEGK  120
AASDSKEENE KTANDESGQD KVLKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC  180
QRYWTAGGTM RNVPVGAGRR KSKSSSLHYR HLLMAPDCMM GSRVDISRSV NPEAFGSSHS  240
TPIQPIGRNE AVLKFGPEVP LCESMASVLS IKEQNVTNTG AVPASENQED NSCASSITSY  300
NMLPENAVPV DKNGAPVYCN GVNSPMPQYY LGAPYMYPWG IGWNNLPMMV PAKGMSESAS  360
PSESCSTIPA PWMNSPLMPP SRLPAPAFPY PLVPPALWGC LSSWPATTWN IPWIRTNDCM  420
SPSSSSNSSC SGNGSPLGKH SRDSHPLREE KEEKSLWIPK TLRIDDPDDA AKSSIWATLG  480
IKPGDPGIFK PFQSKGESKV QTSDSRPARA LQANPAAMSR SQSFQETS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G20470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644026.2	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	J3KYJ1	0.0	J3KYJ1_ORYBR; Uncharacterized protein
STRING	OB01G20470.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-71	cycling DOF factor 2

Link Out ? help Back to Top
Entrez Gene	102701585