PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G20090.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 408aa    MW: 43726.6 Da    PI: 8.2951
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G20090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.68.9e-134367327
                  S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  +++C ++++tGtCk+G++Ck++H++
  OB01G20090.1 43 QPICEYYMKTGTCKFGSNCKYHHPK 67
                  799********************96 PP
2zf-CCCH40.54.6e-1388112327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +++C+++++tG+Ck+G++CkF+H++
  OB01G20090.1  88 EKECSYYMKTGQCKFGSTCKFHHPE 112
                   689********************96 PP
3zf-CCCH38.61.9e-12240266127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++ C++++rtG Ck+G++Ck++H++
  OB01G20090.1 240 PGQPDCQYYMRTGDCKFGATCKYHHPR 266
                   5789*********************96 PP
4zf-CCCH32.21.8e-10289312427
                   ---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    +C ++a++G+C+yG  Ck+ H++
  OB01G20090.1 289 QPCAYYAQNGYCRYGVACKYDHPM 312
                   69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.3E-74067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.1734068IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-74269IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-104367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-64569IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-685112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.18385113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-686112IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-1088112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-491111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413239267IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6239266IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-10241266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5244267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5245266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892285313IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6285312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6286315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-5289310IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-8289312IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSIEIACLVS MFLFSSRNEI VGLWFGGGAK NAAALDYPER VGQPICEYYM KTGTCKFGSN  60
CKYHHPKQDG SVLPVMLNNS GFPIRLGEKE CSYYMKTGQC KFGSTCKFHH PEFGGVPMTP  120
GIYPPLQSPS IPSPHPYASI ANWQMGRPPV VPGSYMPGSY TPMMLSSGMV PLQGWSPYPA  180
SVNPVVSGGA QQNVQGGPVY GMGHHGSSST IAYGGPYVPY ASSTGQSSNN QQEHGFPERP  240
GQPDCQYYMR TGDCKFGATC KYHHPRDLSA PKSNYMFNPL CLPLRPGAQP CAYYAQNGYC  300
RYGVACKYDH PMGTLSYNPS ALPLSDMPIA PYPIGFSIAT LAASSSSPDL RPEYISTKDQ  360
SVNQVTSPVA ASEPVGSILP KGVFPADTMM RAQTNTTSGG SSSPGGGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G20090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116330.0AK111633.1 Oryza sativa Japonica Group cDNA clone:J013116H24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651248.10.0zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLJ3KYF30.0J3KYF3_ORYBR; Uncharacterized protein
STRINGOB01G20090.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-105C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]