PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB01G19380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 597aa MW: 62521.8 Da PI: 8.575 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.2e-30 | 345 | 403 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ OB01G19380.1 345 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRSILITTYEGTHNHP 403 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.6E-34 | 329 | 405 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-28 | 337 | 405 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.505 | 339 | 405 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-37 | 344 | 404 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-27 | 346 | 403 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 597 aa Download sequence Send to blast |
MDKGHLGGGG GGGGGLLALD ASPRPLGFLN LLSPAPFHRS MEADDGGGGX AGGGGGRARR 60 SIEVDFFSDE KRNMKKSRVS TAGAEADDAK GSAAAAGLAI KKEDLTINVS HHRLFLARSA 120 SLPGFCFNYP WRSNKARPSV CVLQLLPAGN NARSDRSMVV DDDAASRPDH DEKSRSSNEL 180 AKMQAELGRM NDENQRLRGM LTQVTSSYQA LQMHLVALMQ QRPQMLPPTQ PLPPPPHQDG 240 KADAAVVPRQ FLDLGPSGAG GEAAAEEPSN SSTEVGSPRR SSSTGNKDQE RGDSPDAPST 300 AAGWLPGRAM APQLADRGHD QQAQEANMRK ARVSVRARSE APIIADGCQW RKYGQKMAKG 360 NPCPRAYYRC TMATGCPVRK QVQRCAEDRS ILITTYEGTH NHPLPPAAMA MASTTSAAAS 420 MLLSGSMPSA DGAAGLMSSN FLARTVLPCS SSMATISGSA PFPTVTLDLT HAPPGAPNAX 480 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX FAQPRPAIGQ LPGPLSDTVS AAAAAITADP 540 NFTVALAAAI TSIIGGQHAA AGGHSNNSTA NNAATTSNQN NTSSNNTTSN NTNSETQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-22 | 331 | 407 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB01G19380.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY676928 | 0.0 | AY676928.1 Oryza sativa (indica cultivar-group) transcription factor OsWRKY99 (OsWRKY99) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015699307.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-107 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | J3KY82 | 0.0 | J3KY82_ORYBR; Uncharacterized protein | ||||
STRING | OB01G19380.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5265 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-85 | WRKY family protein |